Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00690
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580     29   2.9  
12_01_0264 - 1929022-1930212                                           28   8.8  
07_03_0804 - 21639016-21639231,21639379-21639555,21640120-216405...    28   8.8  
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    28   8.8  

>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
          Length = 1101

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = -3

Query: 296 KIYTPLDLITRNKFNRLYG--IHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWSGIR 123
           K+    DL+    F  L G  I     + S   L+   KL +   +Q++HR+ C  S + 
Sbjct: 589 KLPNKFDLLFHLTFLNLSGTDIRVIPSSISKLQLLHTLKLSYCGKLQKLHRNICRLSRLH 648

Query: 122 FYDIRFSNYRNSSIQNLIRDDKL*FTRIL 36
             D+    Y +   QN+ + + L +  +L
Sbjct: 649 KLDLEGCRYLSELPQNISKINSLEYLSVL 677


>12_01_0264 - 1929022-1930212
          Length = 396

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 308 LLLIKIYTPLDLITRNKFNRLYGIHAFERNSSIQNLIRDDKLWFT 174
           ++++  Y  +D      FN+ +G +AF+ NS   + + D +L FT
Sbjct: 203 VVIVMSYVVVDAYILVSFNQPWGTYAFDTNSIKWHKVDDKRLPFT 247


>07_03_0804 -
           21639016-21639231,21639379-21639555,21640120-21640588,
           21640608-21641218
          Length = 490

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -3

Query: 290 YTPLDLITRNKFNRLYG---IHAFERNSSIQNL 201
           Y+ LDL    K ++ YG   +H  +RNSSI+NL
Sbjct: 377 YSKLDLGVITKGHKSYGSSVVHFLKRNSSIRNL 409


>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 440 LRSGRAFPAGTFSLIPGPSESIIRLFANRN 529
           L+SG  F    F+L+PGP +  I+ F  RN
Sbjct: 122 LKSG--FEVSAFALLPGPKDFPIQCFVKRN 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,718,654
Number of Sequences: 37544
Number of extensions: 317167
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)