Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00690
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)              30   2.2  
SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57)          29   3.9  
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   3.9  
SB_34391| Best HMM Match : PPR (HMM E-Value=7.8e-08)                   29   5.2  
SB_32343| Best HMM Match : M20_dimer (HMM E-Value=0.0021)              29   5.2  
SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87)          28   6.8  
SB_34964| Best HMM Match : Phage_integr_N (HMM E-Value=5.1)            28   6.8  
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 28   6.8  
SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)          28   6.8  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_893| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.8  
SB_26899| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.73)          28   6.8  
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 28   6.8  
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_6953| Best HMM Match : Phage_integrase (HMM E-Value=0.33)           28   9.0  

>SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
 Frame = +1

Query: 265 LVIKSSGVYIFMRSKLTRYVPPTCSYHESRGSDVRCATRCETCG*RFISLVIYKPSFCSS 444
           L+ K    ++     L RY P +   H      V  + R    G   +S ++ +  F   
Sbjct: 604 LLAKDGSTFLQFNEALERYFPRSVEVHIITDEKVDYSNRKVQSGILDLSAIVTENPF--- 660

Query: 445 FRTSLPRWNVLVNTGSERVDYTIIRESKHKSIQKFDIFRLFEVLR*EL-FDPSGPAV 612
           ++ +   W V +N  S++   +I      K++QKF I   F+ L  +L F P G  +
Sbjct: 661 YQNTTISWMVSLNDFSKKTGASIEGPFFMKTLQKFLIIPAFQFLAEDLRFSPDGSTI 717


>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
          Length = 659

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 117 VKSNPRPETSVSMNLLHD 170
           VKSNPR E   S+N+LHD
Sbjct: 393 VKSNPRQENDKSVNILHD 410


>SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57)
          Length = 295

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308 SLLDMYRRRAVITSHAAPTCGARLD 382
           ++LD+ + + VI S AA  CGARLD
Sbjct: 196 NVLDLGQTKQVINSAAAKKCGARLD 220


>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1858

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308 SLLDMYRRRAVITSHAAPTCGARLD 382
           ++LD+ + + VI S AA  CGARLD
Sbjct: 636 NVLDLGQTKQVINSAAAKKCGARLD 660


>SB_34391| Best HMM Match : PPR (HMM E-Value=7.8e-08)
          Length = 202

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -3

Query: 281 LDLITRNKFNRLYGIHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWSGI 126
           L L   N + R + ++   R    Q  +    + FT+ M Q  R   LW GI
Sbjct: 140 LALFKHNNYKRAFELYEEMRQQGFQANVNTYAVLFTKSMDQYGRGQKLWEGI 191


>SB_32343| Best HMM Match : M20_dimer (HMM E-Value=0.0021)
          Length = 130

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 239 IHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWSGIRFYDIRFSNYRNSSI 81
           +H F  N+++  ++ D  +  T   Q  H  A  W G+   D     Y N S+
Sbjct: 16  VHPFPSNTTMPTVLADKVVMATFKGQTTHAAAFPWEGVNALDAAIMAYSNLSM 68


>SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308 SLLDMYRRRAVITSHAAPTCGARLD 382
           ++LD+ + + VI S AA  CGARLD
Sbjct: 616 NVLDLGQVKQVINSAAAKKCGARLD 640



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 311 LLDMYRRRAVITSHAAPTCGARLD 382
           +LD+ + + VI S AA  CGARLD
Sbjct: 326 VLDLGQVKQVINSAAAKKCGARLD 349


>SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87)
          Length = 417

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308 SLLDMYRRRAVITSHAAPTCGARLD 382
           ++LD+ + + VI S AA  CGARLD
Sbjct: 120 NVLDLGQVKQVINSAAAKKCGARLD 144


>SB_34964| Best HMM Match : Phage_integr_N (HMM E-Value=5.1)
          Length = 175

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308 SLLDMYRRRAVITSHAAPTCGARLD 382
           ++LD+ + + VI S AA  CGARLD
Sbjct: 120 NVLDLGQVKQVINSAAAKKCGARLD 144


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308  SLLDMYRRRAVITSHAAPTCGARLD 382
            ++LD+ + + VI S AA  CGARLD
Sbjct: 1121 NVLDLGQVKQVINSAAAKKCGARLD 1145



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308  SLLDMYRRRAVITSHAAPTCGARLD 382
            ++LD+ + + VI S AA  CGARLD
Sbjct: 1569 NVLDLGQVKQVINSAAAKKCGARLD 1593


>SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)
          Length = 731

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308 SLLDMYRRRAVITSHAAPTCGARLD 382
           ++LD+ + + VI S AA  CGARLD
Sbjct: 267 NVLDLGQVKQVINSAAAKKCGARLD 291


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -2

Query: 549 KLLNRFMFRFANNRIIDSLGPGINENVPAGKARPERRTERRFIYYKGNETLPARLASSRA 370
           K+   FM RF N   +D +   ++ +VP  ++    R   R    +   +LP +L +S  
Sbjct: 585 KIRESFMKRFVNTESVDDMPLDLSMSVPGDESLSPNRMRGR----RAAISLPVKLLNSSV 640

Query: 369 PHV 361
           P +
Sbjct: 641 PEI 643


>SB_893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308 SLLDMYRRRAVITSHAAPTCGARLD 382
           ++LD+ + + VI S AA  CGARLD
Sbjct: 181 NVLDLGQVKQVINSAAAKKCGARLD 205


>SB_26899| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.73)
          Length = 311

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308 SLLDMYRRRAVITSHAAPTCGARLD 382
           ++LD+ + + VI S AA  CGARLD
Sbjct: 257 NVLDLGQVKQVINSAAAKKCGARLD 281


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308  SLLDMYRRRAVITSHAAPTCGARLD 382
            ++LD+ + + VI S AA  CGARLD
Sbjct: 1204 NVLDLGQVKQVINSAAAKKCGARLD 1228


>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 308 SLLDMYRRRAVITSHAAPTCGARLD 382
           ++LD+ + + VI S AA  CGARLD
Sbjct: 855 NVLDLGQVKQVINSAAAKKCGARLD 879


>SB_6953| Best HMM Match : Phage_integrase (HMM E-Value=0.33)
          Length = 721

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 311 LLDMYRRRAVITSHAAPTCGARLD 382
           +LD+ + + VI S AA  CGARLD
Sbjct: 326 VLDLGQVKQVINSAAAKKCGARLD 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,402,770
Number of Sequences: 59808
Number of extensions: 403588
Number of successful extensions: 1186
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)