Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00690
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defecti...    29   3.4  
U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defecti...    29   3.4  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    29   3.4  
AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity...    29   3.4  
U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defective
           protein 1, isoformc protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 305 LLIKI-YTPLDLITRNKFN-RLYGIHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWS 132
           L+++I +  L  + R   N RL G+     +  +Q   RD  +  TR++Q+I +    +S
Sbjct: 462 LIVRIGFHDLQAVFRRTVNPRLNGVFGISLSRLVQRERRDTPIVLTRLIQEIEKRGVDYS 521

Query: 131 GI 126
           G+
Sbjct: 522 GL 523


>U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defective
           protein 1, isoformb protein.
          Length = 942

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 305 LLIKI-YTPLDLITRNKFN-RLYGIHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWS 132
           L+++I +  L  + R   N RL G+     +  +Q   RD  +  TR++Q+I +    +S
Sbjct: 660 LIVRIGFHDLQAVFRRTVNPRLNGVFGISLSRLVQRERRDTPIVLTRLIQEIEKRGVDYS 719

Query: 131 GI 126
           G+
Sbjct: 720 GL 721


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
           protein 1, isoforma protein.
          Length = 987

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 305 LLIKI-YTPLDLITRNKFN-RLYGIHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWS 132
           L+++I +  L  + R   N RL G+     +  +Q   RD  +  TR++Q+I +    +S
Sbjct: 728 LIVRIGFHDLQAVFRRTVNPRLNGVFGISLSRLVQRERRDTPIVLTRLIQEIEKRGVDYS 787

Query: 131 GI 126
           G+
Sbjct: 788 GL 789


>AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity
           specification proteinSYD-1 protein.
          Length = 942

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 305 LLIKI-YTPLDLITRNKFN-RLYGIHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWS 132
           L+++I +  L  + R   N RL G+     +  +Q   RD  +  TR++Q+I +    +S
Sbjct: 660 LIVRIGFHDLQAVFRRTVNPRLNGVFGISLSRLVQRERRDTPIVLTRLIQEIEKRGVDYS 719

Query: 131 GI 126
           G+
Sbjct: 720 GL 721


>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -3

Query: 503 STRSD----PVLTRTFQRGRLVRNEEQNDGLYITREMKRYPHVSHLV 375
           STRSD    P+L+    R  +VR+   N G++     K   HV++ V
Sbjct: 224 STRSDDVPAPLLSNVTDRSEVVRHHSSNSGVWNRHVNKAERHVTYTV 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,193,801
Number of Sequences: 27780
Number of extensions: 304039
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)