Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00690
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61320.1 68414.m06911 hypothetical protein                          28   7.4  
At4g10620.1 68417.m01736 expressed protein                             27   9.8  
At1g20530.1 68414.m02558 hypothetical protein                          27   9.8  

>At1g61320.1 68414.m06911 hypothetical protein
          Length = 459

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 221 NSSIQNLIRDDKLWFTRIMQQIHRHACLWSGIRFY 117
           N  I N +++  L++TRI +  H+ + L   +RFY
Sbjct: 255 NILITNALKEANLYYTRIRRLYHQKSDLVDTLRFY 289


>At4g10620.1 68417.m01736 expressed protein
          Length = 597

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 419 ITREMKRYPHVSHLVAHRTSEPRDS**LHVGGTYRVSL 306
           +TRE +R  H+S  +  RT   ++   +H+GG  R+ +
Sbjct: 385 LTREEQRLVHISKELKPRTYRIKEGYTVHIGGLMRLDI 422


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 239 IHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWSGI 126
           IH         N +RD++LWF ++ + IHR + +W+ +
Sbjct: 374 IHKINNICLTINKLRDEELWF-QMKELIHRLSEMWNSM 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,998,809
Number of Sequences: 28952
Number of extensions: 274528
Number of successful extensions: 644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)