Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00689
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 301 9e-83
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 300 1e-82
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 300 1e-82
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 171 7e-44
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 163 2e-41
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 101 1e-22
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 54 3e-08
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 45 1e-05
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 45 1e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 45 1e-05
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 36 0.006
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 35 0.014
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.033
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.31
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.40
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 29 0.94
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.94
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 3.8
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 26 6.6
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 8.7
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 8.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 301 bits (738), Expect = 9e-83
Identities = 141/155 (90%), Positives = 147/155 (94%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 404
DKLKAERER ITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 405 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 509
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKM
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM 155
Score = 83.0 bits (196), Expect = 4e-17
Identities = 37/74 (50%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +2
Query: 527 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKDGSGA*RRQ 706
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++ +
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 707 S*R-KMLIEALDAI 745
+ K L+EA+D+I
Sbjct: 220 VVKGKTLLEAIDSI 233
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 300 bits (737), Expect = 1e-82
Identities = 140/155 (90%), Positives = 147/155 (94%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 404
DKLKAERER ITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 405 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 509
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKM
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM 155
Score = 83.0 bits (196), Expect = 4e-17
Identities = 37/74 (50%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +2
Query: 527 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKDGSGA*RRQ 706
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++ +
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 707 S*R-KMLIEALDAI 745
+ K L+EA+D+I
Sbjct: 220 VVKGKTLLEAIDSI 233
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 300 bits (737), Expect = 1e-82
Identities = 140/155 (90%), Positives = 147/155 (94%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 404
DKLKAERER ITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 405 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 509
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKM
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKM 155
Score = 83.0 bits (196), Expect = 4e-17
Identities = 37/74 (50%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +2
Query: 527 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKDGSGA*RRQ 706
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++ +
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 707 S*R-KMLIEALDAI 745
+ K L+EA+D+I
Sbjct: 220 VVKGKTLLEAIDSI 233
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 171 bits (417), Expect = 7e-44
Identities = 77/151 (50%), Positives = 107/151 (70%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 236
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 237 AERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 416
ERE+ T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 417 AGISKNGQTREHALLAFTLGVKQLIVGVNKM 509
AG + GQTREHA+LA T G+ L+V +NKM
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINKM 386
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 163 bits (396), Expect = 2e-41
Identities = 76/151 (50%), Positives = 101/151 (66%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 236
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 237 AERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 416
ER R +T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 417 AGISKNGQTREHALLAFTLGVKQLIVGVNKM 509
G +NGQTREHA L LG+ +++V VNK+
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNKL 325
Score = 42.7 bits (96), Expect = 5e-05
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +2
Query: 527 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFK 679
+SE RF+EIK VS + IK +G+ + V FVPIS G N++ + S W+K
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK 383
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 101 bits (242), Expect = 1e-22
Identities = 61/153 (39%), Positives = 87/153 (56%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 230
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 231 LKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 410
E+ R ITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 411 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 509
QTREH LLA +GVKQ++V +NK+
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVVYINKV 179
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 53.6 bits (123), Expect = 3e-08
Identities = 36/113 (31%), Positives = 52/113 (46%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 249 RRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 407
R ITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 45.2 bits (102), Expect = 1e-05
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 215
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 216 WVLDKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 392
+ L AE D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 45.2 bits (102), Expect = 1e-05
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 249 RRITIDIAL----WK---------------FETSKYYVTIIDAPGHRDFIKNMITGTSQA 371
+ ITI A W+ FE S Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 372 DCAVLIVAAGTGEFEAGISKNGQTREH 452
D AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 45.2 bits (102), Expect = 1e-05
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 215
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 216 WVLDKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 392
+ L AE D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.4 bits (100), Expect = 2e-05
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 249 RRITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 407
R IT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 35.9 bits (79), Expect = 0.006
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKG----SFKYAWVLD 227
N ++ HVD GK+T L+ G I + T+ + E+ +G S +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 228 KLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 407
+ E+R+ D Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 81 VISQNDEKRVEKD----------YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 34.7 bits (76), Expect = 0.014
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +3
Query: 300 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 479
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 480 KQLIVGVNKM 509
K +I+ NK+
Sbjct: 163 KHIIILQNKV 172
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.033
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 282 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 407
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 225 DKLKAER-ERRITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 347
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.9 bits (64), Expect = 0.40
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +3
Query: 78 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERER 251
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 252 RITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 392
K + + + IID PGH F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.7 bits (61), Expect = 0.94
Identities = 27/79 (34%), Positives = 37/79 (46%)
Frame = +3
Query: 390 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRRKYP 569
VA GT E GI NG E+A+ A +I V++ P++H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 570 HTSRRLATTQLLSLSCPFL 626
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 0.94
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
+ +V GH+ GKS L+Y + + + S +Y D ERE
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT---DTHYLERE 187
Query: 249 RRITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 392
R ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 188 RVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 570 HTSRRLATTQLLSLSCPFLDGTETTCWSLQPKCLGSRMAVERKEGKADGKCSLKLS 737
H ++A+ +LL L FL +E L L ++ E + KCS+KLS
Sbjct: 842 HLENKIASARLLKLDDEFLVTSEVYVRLLMHHGLWQKLEEFLGELRTQTKCSIKLS 897
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 722 AFSVSFAFFTLHCHP*TKAFWLKAPTCCLRA 630
AF + F F L C + W K P CL++
Sbjct: 12 AFLIYFIIFRLCCCSPQTSHWCKYPALCLKS 42
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 528 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 617
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 231 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 103
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,876
Number of Sequences: 5004
Number of extensions: 66656
Number of successful extensions: 243
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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