Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00689
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 138 3e-33
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 125 3e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 113 1e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 48 6e-06
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 37 0.020
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 33 0.19
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 33 0.19
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.7
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 30 2.3
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2) 28 7.0
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 138 bits (335), Expect = 3e-33
Identities = 60/127 (47%), Positives = 90/127 (70%)
Frame = +3
Query: 129 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERRITIDIALWKFETSKYYVT 308
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++ T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 309 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 488
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 489 IVGVNKM 509
++ VNKM
Sbjct: 286 VILVNKM 292
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/34 (41%), Positives = 26/34 (76%)
Frame = +2
Query: 497 SKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 598
+K +D T ++E R+EEIK +++ ++KK+G+NP
Sbjct: 290 NKMDDPTVK-WNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 125 bits (302), Expect = 3e-29
Identities = 57/60 (95%), Positives = 58/60 (96%)
Frame = +3
Query: 189 MGKGSFKYAWVLDKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 368
MGKGSFKYAWVLDKLKAERER ITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 113 bits (273), Expect = 1e-25
Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Frame = +3
Query: 261 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 440
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 441 TREHALLAFTLGVKQLIVGVNK--MIPLNHHTVSP 539
TREHA+L +LGV QLIV +NK M+ L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 191
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 48.4 bits (110), Expect = 6e-06
Identities = 28/110 (25%), Positives = 51/110 (46%)
Frame = +3
Query: 78 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERRI 257
+I H D+GK+T T L+ G I +EA + K D ++ ER+R I
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 258 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 407
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 38.3 bits (85), Expect = 0.007
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 6/140 (4%)
Frame = +3
Query: 6 RDYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE-- 173
R + ++R P ++ T I + V+G+V+SGKST G L Y G + + F
Sbjct: 94 RKVVEVLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHL 152
Query: 174 KEAQEMGKGSFKYAWVLDKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 353
E Q S + + E A E S +T ID GH ++K I
Sbjct: 153 HEIQSGRTSSISHEILGFSCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTI 212
Query: 354 TGTS--QADCAVLIVAAGTG 407
G + D A+L++A G
Sbjct: 213 FGLTGHSPDYAMLVIAGNAG 232
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 36.7 bits (81), Expect = 0.020
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKFEKEAQEMGKGSFKYAW 218
M K+ N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 219 VLDKLKAERERRITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 395
L E I K + + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 396 AGTG 407
+G
Sbjct: 132 CVSG 135
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 33.5 bits (73), Expect = 0.19
Identities = 35/135 (25%), Positives = 57/135 (42%)
Frame = +3
Query: 42 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 221
K+ + + NI V+GHVDSGK++ L + F+K Q +G
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTA------STASFDKNPQSQERGI-----T 76
Query: 222 LDKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 401
LD + + + + E +T++D PGH IK +I G A +I G
Sbjct: 77 LDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQIIGECG 130
Query: 402 TGEFEAGISKNGQTR 446
T E G ++G+ +
Sbjct: 131 T--IEGGFGQSGKVK 143
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 33.5 bits (73), Expect = 0.19
Identities = 25/94 (26%), Positives = 40/94 (42%)
Frame = +3
Query: 228 KLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 407
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 408 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 509
QT EH + +K +++ NK+
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKI 128
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 33.1 bits (72), Expect = 0.25
Identities = 24/65 (36%), Positives = 30/65 (46%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 249 RRITI 263
R IT+
Sbjct: 1987 RGITV 1991
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 303 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 407
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 252 RITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 392
RI + +F+ + IID PGH F G+S D A+L+V
Sbjct: 663 RIQTKMVKEEFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +3
Query: 255 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 398
IT I + + + +D PGH F G D +++VAA
Sbjct: 124 ITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 213 AWVLDKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 389
AW D K E + RITI A + + V+I D ++ N +GT+ DC VL+
Sbjct: 4683 AWYRDDKKLEDDHRITIIAAGDLHCLTIFGVSIKDEAVYKVVATN-ASGTTSCDCEVLV 4740
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 467 HPRCQTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 595
H + + RR ++N + + P+FE++K + +S KKI N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 512 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 652
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
Length = 125
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 437 SNP*ACLARFHPRC-----QTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 595
+N A L RF C ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 25 NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82
>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 467 HPRCQTAHRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 595
H ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 8 HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,649,522
Number of Sequences: 59808
Number of extensions: 506903
Number of successful extensions: 1579
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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