Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00688
(404 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 60 2e-10
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 59 2e-10
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 31 0.051
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 0.84
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 27 1.1
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 27 1.1
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 1.1
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 26 2.6
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 4.5
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 4.5
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 25 4.5
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.9
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 5.9
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 24 7.8
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 59.7 bits (138), Expect = 2e-10
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +1
Query: 88 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRA 252
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRA 67
Score = 29.9 bits (64), Expect = 0.16
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 255 KFLKRRLGTHIRAKRKREELSNVLAQMR 338
K K+RLGT RAK K EEL++V+ R
Sbjct: 69 KLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 59.3 bits (137), Expect = 2e-10
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +1
Query: 88 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRA 252
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA
Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRA 67
Score = 29.9 bits (64), Expect = 0.16
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 255 KFLKRRLGTHIRAKRKREELSNVLAQMR 338
K K+RLGT RAK K EEL++V+ R
Sbjct: 69 KLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 31.5 bits (68), Expect = 0.051
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 231 GVKRQACSKFLKRRLGTHIRAKR 299
GV R+ACS LK+R+ T +R KR
Sbjct: 322 GVLREACSNLLKKRVPTELRLKR 344
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 0.84
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 301 SVKNLATCSLR*GRQPPRLITITI 372
SVKNL SL+ PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 365 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELR 252
+V SL G L + A+FFT PL ++VCA + + +
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAK 581
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 96 DTLAASGYFSCFVAFSQAYCDFKTRSHDFLVP 1
DT++ G F+CFV +Q + +F + FL P
Sbjct: 431 DTISTGGRFACFV-IAQFFSNFGPNATTFLYP 461
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +3
Query: 174 STRSCRTRSI*EEGY---GVT*GVKRQACSKFLKRRLGTHIR 290
+TR+C T+S+ EEG+ V+ +KR+ + LK R+ ++
Sbjct: 928 ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARIKDKVK 969
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 269 SLQELRARLSFDTLSNSIALFSY*ACPTTS 180
SL + +S+D+LS+ +++ S+ CP T+
Sbjct: 71 SLSSSDSIMSYDSLSDDVSVLSFLDCPLTT 100
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 222
RPA L+ L+T SKFV + V Y K ++
Sbjct: 27 RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 4.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 233 TLSNSIALFSY*ACPTTSRTKSRTNLECF 147
T+++S LF+ A T+ TKS N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 134 FSLAG-LILMALSVIPLRPADILVVLWPFRRPTAISKRGAMISSC 3
F++ G LI++ +P+ P +L +L+P + G +SSC
Sbjct: 31 FNIRGKLIVIDRVELPILPTTVLALLFPNGFHLLLKHEGGDVSSC 75
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 24.6 bits (51), Expect = 5.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 341 LPHLSEHVAKFFTLPLGADVCAQSSLQELRARLSFDTLSNSIA 213
LP+ S + FF LP A +S ++ +L N+IA
Sbjct: 284 LPNASGSSSSFFGLPTAVSASAGTSFSDISPAAPKASLENNIA 326
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 24.6 bits (51), Expect = 5.9
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +3
Query: 264 KRRLGTHIRAKRKREELSNVLAQM 335
K+RL +I K K+EE+++++A++
Sbjct: 89 KKRLDKYIENKLKKEEVASLIAKL 112
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 184 VVGHAQYEKRAMELLKVSKDKRALSS 261
++ HA ++ L+VSKDKR +++
Sbjct: 1119 LINHADILSSILDYLQVSKDKRRMAT 1144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,750
Number of Sequences: 5004
Number of extensions: 26228
Number of successful extensions: 77
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -