Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00688
(404 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 77 7e-15
SB_3539| Best HMM Match : rve (HMM E-Value=5.6e-11) 32 0.15
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.20
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97) 28 3.3
SB_5982| Best HMM Match : PAP2 (HMM E-Value=8.3e-19) 27 4.4
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 27 4.4
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09) 27 4.4
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 76.6 bits (180), Expect = 7e-15
Identities = 41/74 (55%), Positives = 49/74 (66%)
Frame = +1
Query: 34 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 213
+AVGL+KGHK TK + +P+R KG K KFVRD+VREVVG A YEKR
Sbjct: 1 MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50
Query: 214 AMELLKVSKDKRAL 255
MELL++ KDKRAL
Sbjct: 51 VMELLRIGKDKRAL 64
Score = 50.0 bits (114), Expect = 7e-07
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3
Query: 237 KRQACSKFLKRRLGTHIRAKRKREELSNVLAQMRK 341
K + KF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 59 KDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93
>SB_3539| Best HMM Match : rve (HMM E-Value=5.6e-11)
Length = 519
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 97 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRALSS*SDD 273
+DK +R+ P +++ + + + V+ ++G A+Y K L ++K R L+ D
Sbjct: 190 SDKGLRVDPDKVRAITEMPTITDKAAVKRLLGLAEYLAKFLPHLSDLTKPLRDLTQKEAD 249
Query: 274 WAHTSAPRGSVKNLATCSLR 333
W S R +++NL R
Sbjct: 250 WVWDSPQRTAMENLKAAITR 269
>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 31.9 bits (69), Expect = 0.20
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 97 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRALSS*SDD 273
+DK +R+ P +++ + + + V+ ++G AQY K L ++K R L+ D
Sbjct: 558 SDKGLRVDPDKVRAITEMTTPTDKAAVQRLLGLAQYLAKFLPHLSDLTKPLRDLTQKEAD 617
Query: 274 WAHTSAPRGSVKNL 315
W S + +++NL
Sbjct: 618 WVWDSPQQTAMENL 631
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 133 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 246
+GL+ K + ++ E GHA Y+K L KVS+++
Sbjct: 32 RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 133 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSK 240
+GL+ K R ++ E GH Y+K L KVS+
Sbjct: 88 RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR 123
>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 27.9 bits (59), Expect = 3.3
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Frame = +1
Query: 40 VGLRKGHKTT-----KISAGRKGITDKAIRIRPARLKGLQ----TKHS---KFVRDLVRE 183
V RKGHK T + G+KGI K R+ +R Q KHS K +R +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168
Query: 184 VVGHAQYEKRAMELLKVSKDK 246
+ H+ E KV K K
Sbjct: 1169 -LEHSSENSSEEEKRKVRKKK 1188
>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
Length = 971
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 280 VPNRRFKNLEHACLLTP*VTP*PSSHIERVRQLRVLNHGQTW 155
+P R + A L+ P PS ++ R+ R NHG+TW
Sbjct: 771 LPTERDYSSALAALMRKAKQPKPSPNLVHTRRERPRNHGRTW 812
>SB_5982| Best HMM Match : PAP2 (HMM E-Value=8.3e-19)
Length = 320
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 287 DVCAQSSLQELRARLSFDTLSNSIALF 207
DVC +L RARLSF +++ +A++
Sbjct: 171 DVCTGDALDVKRARLSFPSVNTLVAMY 197
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 97 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRALS 258
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L+
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKSCPQLSDITKPLRDLT 713
>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
Length = 1248
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 249
RP +L+ ++ + +VR L + G +Y + L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668
>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 27.1 bits (57), Expect = 5.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -3
Query: 147 RLKTL*SSWPNS----DGFVCDTLAASGYFSCFVAFSQAYCDFKTRSH 16
RLK++ SW N+ G CD A+G F V FS + K R H
Sbjct: 440 RLKSMRWSWENARTSKGGQSCDDPDATGDFEDEVTFSDPHLQKKFRRH 487
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 97 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRALS 258
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L+
Sbjct: 618 TDKGLKVNPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDLT 672
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,483,319
Number of Sequences: 59808
Number of extensions: 212584
Number of successful extensions: 555
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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