Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00688
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    66   9e-12
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    30   0.73 
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    30   0.73 
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    29   1.3  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    28   2.2  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   2.2  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical ...    27   5.1  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   6.8  
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    26   9.0  
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st...    26   9.0  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 66.1 bits (154), Expect = 9e-12
 Identities = 34/74 (45%), Positives = 49/74 (66%)
 Frame = +1

Query: 34  IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 213
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 214 AMELLKVSKDKRAL 255
            +E+L++SKDKRAL
Sbjct: 59  VLEMLRISKDKRAL 72



 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 22/35 (62%), Positives = 25/35 (71%)
 Frame = +3

Query: 237 KRQACSKFLKRRLGTHIRAKRKREELSNVLAQMRK 341
           K +   KFLKRR+GTH RAK KREEL NV+   RK
Sbjct: 67  KDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +1

Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALS 258
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL+
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALA 725


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +1

Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALS 258
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL+
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALA 722


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 115 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 249
           ++  ++  L T    +   L+REV G   Y++R  E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +1

Query: 130 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 249
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +1

Query: 130 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 249
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 163 VRDLVREVVGHAQYEKRAMELLKV 234
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical
           protein H34C03.1 protein.
          Length = 478

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 301 FLLARMCVPNRRFKNLEHACLLTP*VTP*PSSHIE-RVRQLRVLNHGQTWSVSFEDPL 131
           F    MC+P  R  ++  AC LT        S IE    + + LN+G TW   + D +
Sbjct: 101 FFSISMCMPRHRHPSILRACRLT-------VSAIECLTEETKSLNNGTTWQDLYTDEI 151


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 172 LVREVVGHAQYEKRAMELLKV 234
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
            protein.
          Length = 1603

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +1

Query: 10   EIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLV 177
            E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R++ 
Sbjct: 1128 ELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRNIE 1187

Query: 178  REVVGHAQYE 207
            RE  G  +YE
Sbjct: 1188 REYKGIPEYE 1197


>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 5 protein.
          Length = 1603

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +1

Query: 10   EIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLV 177
            E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R++ 
Sbjct: 1128 ELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRNIE 1187

Query: 178  REVVGHAQYE 207
            RE  G  +YE
Sbjct: 1188 REYKGIPEYE 1197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,202,139
Number of Sequences: 27780
Number of extensions: 147677
Number of successful extensions: 346
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)