Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00687
(673 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13560.1 68418.m01566 expressed protein weak similarity to SP... 33 0.23
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 32 0.40
At5g11390.1 68418.m01329 expressed protein 31 0.53
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 31 0.53
At3g42080.1 68416.m04318 hypothetical protein hypothetical prote... 31 0.92
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 31 0.92
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ... 30 1.2
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ... 30 1.2
At3g05380.1 68416.m00588 myb family transcription factor contain... 30 1.6
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 29 2.1
At1g29680.1 68414.m03627 expressed protein 29 2.1
At1g24764.1 68414.m03106 expressed protein 29 2.1
At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10) ide... 29 2.1
At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10) ide... 29 2.1
At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10) ide... 29 2.1
At1g03780.2 68414.m00358 targeting protein-related similar to mi... 29 2.1
At1g03780.1 68414.m00359 targeting protein-related similar to mi... 29 2.1
At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containi... 29 2.8
At5g37350.2 68418.m04487 RIO1 family protein similar to extragen... 29 2.8
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 29 2.8
At5g16320.1 68418.m01908 expressed protein 29 2.8
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 29 3.7
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 28 4.9
At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family pr... 28 4.9
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 4.9
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 28 4.9
At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-... 28 6.5
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-... 28 6.5
At3g60380.1 68416.m06753 expressed protein 28 6.5
At5g25820.1 68418.m03064 exostosin family protein contains Pfam ... 27 8.6
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 27 8.6
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 27 8.6
At1g03080.1 68414.m00282 kinase interacting family protein simil... 27 8.6
>At5g13560.1 68418.m01566 expressed protein weak similarity to
SP|O42184 Restin (Cytoplasmic linker protein-170)
(CLIP-170) {Gallus gallus}
Length = 679
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 326 ELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPAVQEKVAAAEESINSITEE 499
E KA + ANE + KE ++ + KQ + D+ V +AAA+ + TEE
Sbjct: 332 EALKARVVKANETGEKEKELGAEIAQLEKQRDELEADLKRVNLSLAAAQARFRNATEE 389
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/85 (22%), Positives = 39/85 (45%)
Frame = +2
Query: 248 RSHRQEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQA 427
R+ EE + ++++ Q +K+ E K +YK + Q T++ K+ +
Sbjct: 246 RTKASEESTKMYDRVEKAQDDSKSLDESLKELTKELQTLYKEKETVEAQQTKALKKKTKL 305
Query: 428 TMDVPAVQEKVAAAEESINSITEEL 502
+DV Q+++ +S N E+L
Sbjct: 306 ELDVKDFQDRITGNIQSKNDALEQL 330
>At5g11390.1 68418.m01329 expressed protein
Length = 703
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +2
Query: 266 ELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPA 445
+L L L + Q ++ V +A+ N +Y T+ + D + + + ++A
Sbjct: 466 KLASLEKHLRDSDLQLEHAVAAVEASKEKQNLLYSTVSDMEDVIEDLKSKVLKAENRADI 525
Query: 446 VQEKVAAAEESINSITEEL 502
+EK+ ES + EEL
Sbjct: 526 TEEKLIMVSESNAEVNEEL 544
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Frame = +2
Query: 251 SHRQEELNDLLAKLDELQAQAKNDVELTKAT----LTAANEIYKTLKEFSDQVTESHKQA 418
S + ++ N ++ L+ A+ + ++E +K + LTA E K K+ ++ KQ
Sbjct: 476 SGQVDKANAVVRALENESAEIRAEMEASKLSASESLTACMEASKKEKKCLKKLLAWEKQK 535
Query: 419 IQATMDVPAVQEKVAAAEESINSITEE 499
++ ++ A +EK+ A ++ IT+E
Sbjct: 536 MKLQDEITAEKEKIKALNRALAQITQE 562
>At3g42080.1 68416.m04318 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 161
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 203 QFRGGHKARSGLAGTRSHRQEELNDLLAKLDEL 301
+F G+KA+ G +H+ EELN+ + +L E+
Sbjct: 84 EFWTGYKAQENTIGKLTHKMEELNNTILELQEM 116
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/67 (22%), Positives = 35/67 (52%)
Frame = +2
Query: 284 AKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPAVQEKVA 463
+K D L +QA + + + L + E+ + + E + + ++ ++++ + QEKV+
Sbjct: 139 SKTDALLSQALSQNSVLEQKLKSLEELSEKVSELKSALIVAEEEGKKSSIQMQEYQEKVS 198
Query: 464 AAEESIN 484
E S+N
Sbjct: 199 KLESSLN 205
>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 765
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 51 ALGLYAEVNTTLLPDIKLNKLHEDSMEM-NRTIDEKSAELDRLIAENEDTLHNLEEGIRR 227
A G+ E+ L + ++ + HE E+ +R I+EK E+ RL+ E + ++E
Sbjct: 559 AEGIEKELENAKLRNKRMKEEHESVRELADRLIEEKDREISRLVDEMTNLRKSMESKPVW 618
Query: 228 GRDLLEQGHTGRRNS 272
+ + H G N+
Sbjct: 619 NKSPSQVHHYGNNNT 633
>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 788
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 51 ALGLYAEVNTTLLPDIKLNKLHEDSMEM-NRTIDEKSAELDRLIAENEDTLHNLEEGIRR 227
A G+ E+ L + ++ + HE E+ +R I+EK E+ RL+ E + ++E
Sbjct: 559 AEGIEKELENAKLRNKRMKEEHESVRELADRLIEEKDREISRLVDEMTNLRKSMESKPVW 618
Query: 228 GRDLLEQGHTGRRNS 272
+ + H G N+
Sbjct: 619 NKSPSQVHHYGNNNT 633
>At3g05380.1 68416.m00588 myb family transcription factor contains
Pfam profile:PF00249 Myb-like DNA-binding domain
Length = 1055
Score = 29.9 bits (64), Expect = 1.6
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 1/126 (0%)
Frame = +2
Query: 248 RSHRQEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQA 427
RS ++ + D LQA A+ + A L + E+ LKE + K +
Sbjct: 366 RSPKKRDDKHTSGAFDALQALAELSASMLPANLMES-ELSAQLKEERTEYDMDEKSSTPE 424
Query: 428 TMDVPAVQEKV-AAAEESINSITEELVAPVTRRRRPGTLPSKRKRNMPTKLLRPPTKSRR 604
+ EK ++S+ + R+ +P L S ++PT L+P T
Sbjct: 425 ATSTSSHGEKANVEPDDSLLHAISSVENANKRKSKPSRLVSTDCDDVPTGKLQPQTSGSL 484
Query: 605 KRPLPK 622
++ PK
Sbjct: 485 RKRKPK 490
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 99 KLNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEE 215
+L + ED + ++EK+ +D LIAEN + LEE
Sbjct: 105 ELTQRREDCTRLQEELEEKTKTVDVLIAENLEIRSQLEE 143
>At1g29680.1 68414.m03627 expressed protein
Length = 237
Score = 29.5 bits (63), Expect = 2.1
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +2
Query: 194 HPSQFR--GGHKARSGLAGTRSHRQEELNDLLAKLDELQAQAKNDVELTKATLTAANEIY 367
H S F GG +R L GT H +ND + + A ++D L ++ +Y
Sbjct: 42 HVSTFAIYGGDMSR--LIGTH-HYVHRVNDEFLQC-AVYASDRSDAPLIGIEYVISDRLY 97
Query: 368 KTLKEFSDQVTESHKQAIQA-TMDVPAVQEKVAAAE 472
+TL E ++ SH +++ + P + E VAA E
Sbjct: 98 ETLSEDEQKLWHSHAYEVKSGSWAYPRLPEVVAAPE 133
>At1g24764.1 68414.m03106 expressed protein
Length = 607
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +2
Query: 248 RSHRQEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKT--LKEFSDQVTESHKQAI 421
R EEL + L KLDE ++ +E + NE K +F+ + T A
Sbjct: 111 REKAVEELTEELTKLDEKLKLTESILESKNLEIKKINEEKKASMAAQFAAEATLRRVHAA 170
Query: 422 QATMDVPAVQEKVAAAEESINSITEEL 502
Q D+P ++ +A E + E+
Sbjct: 171 QKDDDMPPIEAILAPLEAELKLARSEI 197
>At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 251
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +2
Query: 272 NDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPAVQ 451
ND+L+ +D+ + N VE T + Y+ L EFS K+A A + A +
Sbjct: 99 NDILSVIDKHLIPSSNAVESTVFFYKMKGDYYRYLAEFSSGA--ERKEA--ADQSLEAYK 154
Query: 452 EKVAAAEESI 481
VAAAE +
Sbjct: 155 AAVAAAENGL 164
>At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 254
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +2
Query: 272 NDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPAVQ 451
ND+L+ +D+ + N VE T + Y+ L EFS K+A A + A +
Sbjct: 99 NDILSVIDKHLIPSSNAVESTVFFYKMKGDYYRYLAEFSSGA--ERKEA--ADQSLEAYK 154
Query: 452 EKVAAAEESI 481
VAAAE +
Sbjct: 155 AAVAAAENGL 164
>At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 254
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +2
Query: 272 NDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPAVQ 451
ND+L+ +D+ + N VE T + Y+ L EFS K+A A + A +
Sbjct: 99 NDILSVIDKHLIPSSNAVESTVFFYKMKGDYYRYLAEFSSGA--ERKEA--ADQSLEAYK 154
Query: 452 EKVAAAEESI 481
VAAAE +
Sbjct: 155 AAVAAAENGL 164
>At1g03780.2 68414.m00358 targeting protein-related similar to
microtubule-associated protein / targeting protein for
Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
Restricted expression proliferation associated protein
100 (p100) (Differentially expressed in lung cells 2)
(DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
(C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
sapiens}
Length = 725
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 275 DLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHK-QAIQATMDVPAVQ 451
++LAK+ + +A+ N E T+ AN+ +T S +V++ H Q T V
Sbjct: 345 EMLAKIPKFKARPVNKKEFHLQTMARANQHAETSSIASTEVSKQHNDQKHHLTEPKSPVL 404
Query: 452 EKVAAAEESINSITEEL 502
+ + A +I T EL
Sbjct: 405 QTMLRARPTIAKTTAEL 421
>At1g03780.1 68414.m00359 targeting protein-related similar to
microtubule-associated protein / targeting protein for
Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
Restricted expression proliferation associated protein
100 (p100) (Differentially expressed in lung cells 2)
(DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
(C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
sapiens}
Length = 687
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 275 DLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHK-QAIQATMDVPAVQ 451
++LAK+ + +A+ N E T+ AN+ +T S +V++ H Q T V
Sbjct: 345 EMLAKIPKFKARPVNKKEFHLQTMARANQHAETSSIASTEVSKQHNDQKHHLTEPKSPVL 404
Query: 452 EKVAAAEESINSITEEL 502
+ + A +I T EL
Sbjct: 405 QTMLRARPTIAKTTAEL 421
>At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 697
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 30 ARAVYDEALGLYAEVNTTLLPDIKLNKLHEDSMEM 134
+R V+DE + V T LL LNK HED++ +
Sbjct: 279 SRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSI 313
>At5g37350.2 68418.m04487 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 385
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Frame = +2
Query: 311 AKNDVELTKATLTAANE----IYKTLKEFSDQVTESHKQAIQATMDVPAVQEKVAAAEES 478
A N+ E A +T+ + +Y+T+ D + + +Q I+ + +E+ + EES
Sbjct: 272 AVNNPEADVAKITSGQDTGDMLYQTITGLKDALPKVDEQQIEVNAEEEEEEEEEGSGEES 331
Query: 479 INSITEELVAPVTRR--RRPGTLPSKRKRNMPTKLLRPPTKSRRKRPLPK 622
+EL P ++ R+ K ++ K P + +RK+ + K
Sbjct: 332 EEESEKEL-GPEDKKAARKEHKKKVKEEKRESRKTKTPKSVKKRKKKVSK 380
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 29.1 bits (62), Expect = 2.8
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Frame = +2
Query: 311 AKNDVELTKATLTAANE----IYKTLKEFSDQVTESHKQAIQATMDVPAVQEKVAAAEES 478
A N+ E A +T+ + +Y+T+ D + + +Q I+ + +E+ + EES
Sbjct: 418 AVNNPEADVAKITSGQDTGDMLYQTITGLKDALPKVDEQQIEVNAEEEEEEEEEGSGEES 477
Query: 479 INSITEELVAPVTRR--RRPGTLPSKRKRNMPTKLLRPPTKSRRKRPLPK 622
+EL P ++ R+ K ++ K P + +RK+ + K
Sbjct: 478 EEESEKEL-GPEDKKAARKEHKKKVKEEKRESRKTKTPKSVKKRKKKVSK 526
>At5g16320.1 68418.m01908 expressed protein
Length = 470
Score = 29.1 bits (62), Expect = 2.8
Identities = 28/121 (23%), Positives = 46/121 (38%)
Frame = +2
Query: 269 LNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPAV 448
+ D + L++ K+ E N K+ E SD+ + K I+ D
Sbjct: 282 MTDEFEPIPVLKSYIKDCREAALRVCVEDNYSLKSQNEASDKEVSALKPLIKIIKDQNLE 341
Query: 449 QEKVAAAEESINSITEELVAPVTRRRRPGTLPSKRKRNMPTKLLRPPTKSRRKRPLPKQK 628
E +E + EEL R+R T P K++ K K+ + P+P Q+
Sbjct: 342 SE---FTQEKVEERVEELEKNKALRKRNTTNPPKQEPQQKGKKRTRDCKNGSQVPVPSQQ 398
Query: 629 L 631
L
Sbjct: 399 L 399
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains
Pfam profile PF00730: HhH-GPD superfamily base excision
DNA repair protein
Length = 1729
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 419 IQATMDVPAVQEKVAAAEESINSITEELVAPVTRRRRPGTLPSKRKRNMPTKLL---RPP 589
+Q+ MD AV A + N + + V + P PSKRKR K++ +P
Sbjct: 1 MQSIMDSSAVNATEATEQ---NDGSRQDVLEFDLNKTPQQKPSKRKRKFMPKVVVEGKPK 57
Query: 590 TKSRRKRPLPK 622
K R+ LPK
Sbjct: 58 RKPRKPAELPK 68
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +2
Query: 260 QEELNDLLAKLD-ELQAQAKNDVELTKATLTAANEIYKTLK----EFSDQVTESHKQAIQ 424
Q EL+ L L+ +L++ +EL+++ L AA E +T+ E SD++ + +
Sbjct: 656 QRELSTQLRGLEAQLESSEHRVLELSES-LKAAEEESRTMSTKISETSDELERTQIMVQE 714
Query: 425 ATMDVPAVQEKVAAAEESINSITEE 499
T D ++E++A E + +TE+
Sbjct: 715 LTADSSKLKEQLAEKESKLFLLTEK 739
>At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 550
Score = 28.3 bits (60), Expect = 4.9
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +2
Query: 350 AANEIYKTLKEFSDQ---VTESHKQAIQATMDVPAVQEKVAAAE-----ESINSITEELV 505
AA ++ L E Q V+ S K+ IQA D P+V+ AA E NS ++E +
Sbjct: 136 AAEKLILALMEKKPQRRKVSVSEKELIQAIRDKPSVRLNHAATELDRRPNYFNSSSDESI 195
Query: 506 APVTRRRRPGTLPS 547
A +R + T PS
Sbjct: 196 ASSSRTLQLTTKPS 209
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 506 APVTRRRRPGTLPSKRKR--NMPTKLLRPPTKSRRKRPLP 619
+P RRRR + P++R+R + P + R PT R+R P
Sbjct: 314 SPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSP 353
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +2
Query: 257 RQEELNDLLAKLDELQAQAKNDVELTKAT----LTAANEIYKTLKEFSDQVTESHKQAIQ 424
+ + N ++ KL+ A+ + + E +K + L A E K K+ ++ KQ ++
Sbjct: 451 QNDRANVIVRKLENQNAEIRAEREGSKLSASESLKACMEASKKEKKCLKKLVAWEKQILK 510
Query: 425 ATMDVPAVQEKVAAAEESINSITE 496
++ A +EK+ A +++ ITE
Sbjct: 511 LQDEITAEKEKIKALYKTLAQITE 534
>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
identical to ferredoxin-dependent glutamate synthase
precursor [Arabidopsis thaliana] GI:3869251
Length = 1648
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 249 GHTGRRNSTISSLSWMSCRR-KLK-TMWNSRKPR*QP 353
GH G N+ +L+WM R LK +WN R+ +P
Sbjct: 361 GHNGEINTIQGNLNWMQSREASLKAAVWNGRENEIRP 397
>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
identical to ferredoxin-dependent glutamate synthase
precursor [Arabidopsis thaliana] GI:3869251
Length = 1622
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 249 GHTGRRNSTISSLSWMSCRR-KLK-TMWNSRKPR*QP 353
GH G N+ +L+WM R LK +WN R+ +P
Sbjct: 335 GHNGEINTIQGNLNWMQSREASLKAAVWNGRENEIRP 371
>At3g60380.1 68416.m06753 expressed protein
Length = 743
Score = 27.9 bits (59), Expect = 6.5
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Frame = +2
Query: 368 KTLKEFSDQVT-ESHKQAIQATMDVPAVQEKVAAAEESINSITEELVAPVTRR-----RR 529
+TLK S + T S Q A+ + + + ES+NS EELV +R+
Sbjct: 281 ETLKSISSRSTGSSSSQTSYASQNQNRFSPSRSVSAESLNSNVEELVKEKSRQSSSRSSS 340
Query: 530 PGTLPSKRKRNMPTKLLRPPTKSRRKRP 613
P PS P P +RR+ P
Sbjct: 341 PSLPPSPSLSPSPPSPELVPNDTRRRSP 368
>At5g25820.1 68418.m03064 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 654
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 425 ATMDVPAVQEKVAAAEESINSITEELVAPVTRRRRPGTLPS 547
AT P+V+ VA + +++ E APV + P LPS
Sbjct: 157 ATAPAPSVKSPVALPILNPSTVKENATAPVASAKAPVALPS 197
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 449 QEKVAAAEESINSITEELVAPVTRRRRPGTLPSKRKRNMPTKLLRPPTKSRR 604
++KV +E++ + + V +R+ P P+KR+ K + P K +R
Sbjct: 7 KDKVKTTKEALKPVDDRKVG---KRKAPAEKPTKRETRKEKKAKKDPNKPKR 55
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 449 QEKVAAAEESINSITEELVAPVTRRRRPGTLPSKRKRNMPTKLLRPPTKSRR 604
++KV +E++ + + V +R+ P P+KR+ K + P K +R
Sbjct: 7 KDKVKTTKEALKPVDDRKVG---KRKAPAEKPTKRETRKEKKAKKDPNKPKR 55
>At1g03080.1 68414.m00282 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +3
Query: 60 LYAEVNTTLLPDIKLNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDL 239
L+ E+ + + + L L + +E + ++ +S DR I + + ++NLE+ + DL
Sbjct: 1326 LFGELQISAVHETLLEGLTNELVEACKNLESRSTLKDREIEQLKGRVNNLEDANKGQNDL 1385
Query: 240 L 242
+
Sbjct: 1386 M 1386
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,186,352
Number of Sequences: 28952
Number of extensions: 190062
Number of successful extensions: 910
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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