Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00685
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   5.8  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   5.8  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   5.8  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 374 STGCLSKIALICGLSSKSAL*NVIFFPVIFSAL 276
           S  C++K+  I GL S S     + + +IF A+
Sbjct: 14  SLKCITKVLTILGLLSCSFPKKKLVYCIIFGAI 46


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 374 STGCLSKIALICGLSSKSAL*NVIFFPVIFSAL 276
           S  C++K+  I GL S S     + + +IF A+
Sbjct: 10  SLKCITKVLTILGLLSCSFPKKKLVYCIIFGAI 42


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 301 KITFYKADLLDKPQINAIFDKHPVDCVIHFA 393
           ++T Y A  +  P       +HP DC + FA
Sbjct: 338 QMTGYSAMGMAAPHHQNFGPRHPPDCSMEFA 368


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,935
Number of Sequences: 336
Number of extensions: 3382
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)