Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00685
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 96 5e-21
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 91 2e-19
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein... 33 0.031
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch... 28 1.6
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 4.7
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 26 6.3
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.3
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 25 8.3
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 95.9 bits (228), Expect = 5e-21
Identities = 60/156 (38%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Frame = +1
Query: 268 ALQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXX 447
A+ R E I K I F+K DL DK + IFD + VIHFAALKAVGESM
Sbjct: 45 AVARVEFIVRKSIKFFKLDLRDKEGLAQIFDTFKIKGVIHFAALKAVGESMKLPLEYYDN 104
Query: 448 XXXGMLNLLEIMRSHNCYQMGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERSTSSRKC 627
G + LL +MR H + + +T + R +IP+ S K
Sbjct: 105 NICGTITLLNVMREHRVKTVVF--SSSATVYGDATRFDNMIPIPESCPNDPTNPYGKTKY 162
Query: 628 S-----KDLSAADDKWNIISLRYFNPVGAHPSGLIG 720
+ KDL +D+ W LRYFNP+GAHPSGL+G
Sbjct: 163 AIENIIKDLHTSDNTWRGAILRYFNPIGAHPSGLLG 198
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTNSVED 253
G +GYIGSH V+ L+ G++VI +DN NS D
Sbjct: 12 GGAGYIGSHTVIELINHGYKVIIVDNLCNSCYD 44
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 90.6 bits (215), Expect = 2e-19
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Frame = +1
Query: 268 ALQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXX 447
A+ R EK+TGKK+ F++ DLLD+P ++ +F + VIHFA LKAVGES+
Sbjct: 46 AVHRIEKLTGKKVIFHQVDLLDEPALDKVFANQNISAVIHFAGLKAVGESVQVPLSYYKN 105
Query: 448 XXXGMLNLLEIMRSHN----CYQMGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERSTS 615
G +NL+E M+ +N + + + T T P E + +
Sbjct: 106 NISGTINLIECMKKYNVRDFVFSSSATVYGDPTRPGGTIPIPESCPREGTSPY-GRTKLF 164
Query: 616 SRKCSKDLSAADDKWNIISLRYFNPVGAHPSGLIG 720
+D + + N LRYFNP GAHPSG +G
Sbjct: 165 IENIIEDETKVNKSLNAALLRYFNPGGAHPSGELG 199
Score = 41.9 bits (94), Expect = 9e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTNS 244
G +GYIGSH V LLE G++V+ +DN NS
Sbjct: 13 GGAGYIGSHTCVVLLEKGYDVVIVDNLCNS 42
>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 33.5 bits (73), Expect = 0.031
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAI 226
G +G+IGS V LLEAGHEV+ +
Sbjct: 7 GAAGFIGSEIVRQLLEAGHEVVGL 30
>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 303
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/91 (26%), Positives = 39/91 (42%)
Frame = -1
Query: 518 RREPIW*QLCDRIISNKLSIPSRLFW*YNKGCCIDSPTALSAAKWITQSTGCLSKIALIC 339
R +P+W + CD I ++ + IPS + +G +S W QS I ++
Sbjct: 67 RLDPMWKEACDYINASIVKIPSGKTFIATQGPTSNSIDVFWKMVW--QSVPKSGIIVMLT 124
Query: 338 GLSSKSAL*NVIFFPVIFSALCKAGDPSRLL 246
L + L I++PV GD S +L
Sbjct: 125 KLRERHRLKCDIYWPVELFETLNIGDLSVIL 155
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 387 FCGTQSSWGIDAATLIILPEQPAWDAQLIGD 479
F G + WG TL L E PAW + +G+
Sbjct: 90 FRGIVNEWGRSERTLDSLDEPPAWFRREMGE 120
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEV 217
G +G+IG+H LL+AG+ V
Sbjct: 10 GVTGFIGAHVAEQLLQAGYRV 30
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 2 GTSEHELLARKIVISLIINRTIAVKLVYGRFKVNGSKKLRNNAAIQ 139
G++ HE L K V+ N +AV L+Y FK G + A +Q
Sbjct: 203 GSAIHEQLEGKEVV----NELVAVYLIYTVFKDQGISSKAHKALVQ 244
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 505 MGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERST 612
MGSR A ++ N + RS + LEV Q T T
Sbjct: 186 MGSRAVASTSMNAQSSRSHSIFVLEVVQTDTESGET 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,344
Number of Sequences: 5004
Number of extensions: 57115
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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