Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00685
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical p... 81 6e-16
Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical p... 81 6e-16
U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva ... 40 0.001
AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuroni... 40 0.001
U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical pr... 31 1.1
U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical pr... 31 1.1
U58735-5|AAC48145.1| 210|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z68115-4|CAA92165.2| 206|Caenorhabditis elegans Hypothetical pr... 29 3.4
U64847-1|AAN84827.1| 358|Caenorhabditis elegans Hypothetical pr... 29 4.4
U00056-2|AAN65309.2| 187|Caenorhabditis elegans Hypothetical pr... 28 5.9
>Z99709-12|CAI79146.1| 349|Caenorhabditis elegans Hypothetical
protein C47B2.6b protein.
Length = 349
Score = 81.4 bits (192), Expect = 6e-16
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Frame = +1
Query: 268 ALQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXX 447
+L+R ++TGK + F D+ D+ + +F ++ D +IH AALKAVGES+
Sbjct: 48 SLKRVAQLTGKDVPFQNVDVCDEAALEKVFSENKFDGIIHLAALKAVGESVAKPLQYYSN 107
Query: 448 XXXGMLNLLEIMRSHNC--YQMGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERSTSSR 621
LNL+++ +N + S + + ++ + +
Sbjct: 108 NLVASLNLIQMCLKYNVKNFVFSSSATVYGPPSELPITEKSQTGQGITNPY-GQTKYMME 166
Query: 622 KCSKDLSAADDKWNIISLRYFNPVGAHPSGLIG 720
+ D+ A+ +WN++ LRYFNPVGAH SGLIG
Sbjct: 167 QILIDVGKANPEWNVVLLRYFNPVGAHKSGLIG 199
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = +3
Query: 510 FSSSCTVYGEPEHLPITETHPTG-SITNVYGRTKYFIEEML 629
FSSS TVYG P LPITE TG ITN YG+TKY +E++L
Sbjct: 129 FSSSATVYGPPSELPITEKSQTGQGITNPYGQTKYMMEQIL 169
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTN--SVEDE 256
G +G+IGSH V+ LL +G+ V+ IDNF N SV DE
Sbjct: 7 GAAGFIGSHTVLELLNSGYTVLCIDNFANAISVTDE 42
>Z99709-11|CAB16861.1| 347|Caenorhabditis elegans Hypothetical
protein C47B2.6a protein.
Length = 347
Score = 81.4 bits (192), Expect = 6e-16
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Frame = +1
Query: 268 ALQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXX 447
+L+R ++TGK + F D+ D+ + +F ++ D +IH AALKAVGES+
Sbjct: 46 SLKRVAQLTGKDVPFQNVDVCDEAALEKVFSENKFDGIIHLAALKAVGESVAKPLQYYSN 105
Query: 448 XXXGMLNLLEIMRSHNC--YQMGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERSTSSR 621
LNL+++ +N + S + + ++ + +
Sbjct: 106 NLVASLNLIQMCLKYNVKNFVFSSSATVYGPPSELPITEKSQTGQGITNPY-GQTKYMME 164
Query: 622 KCSKDLSAADDKWNIISLRYFNPVGAHPSGLIG 720
+ D+ A+ +WN++ LRYFNPVGAH SGLIG
Sbjct: 165 QILIDVGKANPEWNVVLLRYFNPVGAHKSGLIG 197
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = +3
Query: 510 FSSSCTVYGEPEHLPITETHPTG-SITNVYGRTKYFIEEML 629
FSSS TVYG P LPITE TG ITN YG+TKY +E++L
Sbjct: 127 FSSSATVYGPPSELPITEKSQTGQGITNPYGQTKYMMEQIL 167
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDE 256
G +G+IGSH V+ LL +G+ V+ IDNF N++ DE
Sbjct: 7 GAAGFIGSHTVLELLNSGYTVLCIDNFANAISDE 40
>U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva
protein 1 protein.
Length = 467
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 107 SKKLRNNAAIQEHISDGRSGYIGSHCVVTLLEAGHEVIAIDNF 235
S + RN + + G +G++GSH V L+ GHEVIA+DN+
Sbjct: 127 SVRYRNEETRKRILITGGAGFVGSHLVDKLMLDGHEVIALDNY 169
>AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuronic
acid decarboxylase protein.
Length = 467
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 107 SKKLRNNAAIQEHISDGRSGYIGSHCVVTLLEAGHEVIAIDNF 235
S + RN + + G +G++GSH V L+ GHEVIA+DN+
Sbjct: 127 SVRYRNEETRKRILITGGAGFVGSHLVDKLMLDGHEVIALDNY 169
>U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical
protein F53B1.4 protein.
Length = 342
Score = 32.7 bits (71), Expect = 0.27
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 262 SPALQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGES 417
SP E + F +A L D+P + ++ VD VIHFAA+ V ES
Sbjct: 48 SPLHVEKEIRESPRYKFVEAALEDQPTLIKTLQENEVDMVIHFAAITHVDES 99
>Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical
protein F56F3.4 protein.
Length = 341
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 574 LEVSQMFTAERSTSSRKCSKDLSAADDKWNIISLRYFNPVGAHP 705
LE + F AER T C K LSAA + LR F HP
Sbjct: 262 LENLKKFEAERKTKCNTCFKKLSAAQQTMHCKCLRIFCDRHRHP 305
>U40939-5|AAA81703.3| 343|Caenorhabditis elegans Hypothetical
protein F13D11.4 protein.
Length = 343
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEV 217
G SG+IG+HCV LL+ G+ V
Sbjct: 12 GASGFIGTHCVEILLKNGYRV 32
>U58735-5|AAC48145.1| 210|Caenorhabditis elegans Hypothetical
protein F20B4.4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 441 PEQPAWDAQLIGDNAIT-QLLPNGFSSSC-TVYGEPEHLPITETHPTGSITNVYGRTKYF 614
PE P +A L GD++ T Q P+G S+ + G P HL G+IT + +T+ F
Sbjct: 22 PEAP--EATLQGDSSATAQGNPSGRQSNRRSRRGRPHHLRSPAATIKGTITRIVNKTRQF 79
Query: 615 IEE 623
+E
Sbjct: 80 HQE 82
>Z68115-4|CAA92165.2| 206|Caenorhabditis elegans Hypothetical
protein F19H6.5 protein.
Length = 206
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 465 QLIGDNAITQLLPNGFSSSCTVYGEPEHLPITETHP 572
Q++ +NA+ LL NGF S Y PE ET P
Sbjct: 50 QVVNENAVRTLLANGFKKS---YPAPEEETAIETDP 82
>U64847-1|AAN84827.1| 358|Caenorhabditis elegans Hypothetical
protein F08F3.4 protein.
Length = 358
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 322 DLLDKPQINAIFDKHPVDCVIHFAA-LKAVGESMXXXXXXXXXXXXGMLNLLEIMRSH 492
D+L++ I I +D ++HF+A L AVGE+ G+ N+L++ H
Sbjct: 88 DILNQGSIEEIVVNKNIDTIVHFSALLSAVGET--NVPLALQVNCRGVENILQVAAKH 143
>U00056-2|AAN65309.2| 187|Caenorhabditis elegans Hypothetical
protein R05H11.2 protein.
Length = 187
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 510 FSSSCTVYGEPEHLPITETHPTGSITNVYGRTKYFIEEM 626
+S +V G P +T + P + N+Y R K +I E+
Sbjct: 68 YSDCSSVSGSPSSSTMTSSPPPQNFFNIYDRLKEYISEV 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,297,686
Number of Sequences: 27780
Number of extensions: 334849
Number of successful extensions: 891
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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