Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00685
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.7  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.2  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   2.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.7  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = -2

Query: 247 YRVSEVVNCNDLMTGFQQC----DYAMTSYVSAPPVTNMFLN-RGII 122
           Y V E VN  DLM   QQC    +     Y S   +   FL+ RGI+
Sbjct: 61  YFVMEYVNGGDLMYQIQQCGKFKEPVAVFYASEIAIGLFFLHGRGIV 107


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 680 YRREIMFHLSSAALKSLEHFLDEVLRSAVNICDTSS 573
           Y+R  M        KSLE  LDE+ +      D+ S
Sbjct: 107 YKRAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRS 142


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 680 YRREIMFHLSSAALKSLEHFLDEVLRSAVNICDTSS 573
           Y+R  M        KSLE  LDE+ +      D+ S
Sbjct: 107 YKRAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRS 142


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 680 YRREIMFHLSSAALKSLEHFLDEVLRSAVNICDTSS 573
           Y+R  M        KSLE  LDE+ +      D+ S
Sbjct: 107 YKRAPMGFQGMRGKKSLEEILDEIKKKTTRFQDSRS 142


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 238 SEVVNCNDLMTGFQ 197
           S++ NCN LMT F+
Sbjct: 179 SDLDNCNHLMTKFE 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,678
Number of Sequences: 438
Number of extensions: 4166
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)