Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00685
(722 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP... 99 3e-21
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 98 4e-21
At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative / UDP... 92 4e-19
At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose... 88 5e-18
At1g63180.1 68414.m07140 UDP-glucose 4-epimerase, putative / UDP... 85 4e-17
At1g30620.1 68414.m03745 UDP-D-xylose 4-epimerase, putative (MUR... 49 3e-06
At4g20460.1 68417.m02985 NAD-dependent epimerase/dehydratase fam... 48 6e-06
At5g44480.1 68418.m05450 NAD-dependent epimerase/dehydratase fam... 48 8e-06
At2g34850.1 68415.m04279 NAD-dependent epimerase/dehydratase fam... 43 2e-04
At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase fam... 40 0.001
At3g53520.2 68416.m05910 NAD-dependent epimerase/dehydratase fam... 35 0.047
At3g53520.1 68416.m05909 NAD-dependent epimerase/dehydratase fam... 35 0.047
At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase fam... 34 0.11
At4g00110.1 68417.m00011 NAD-dependent epimerase/dehydratase fam... 33 0.14
At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase fam... 33 0.19
At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam... 33 0.25
At2g27860.1 68415.m03377 expressed protein 33 0.25
At1g08200.1 68414.m00906 expressed protein 32 0.44
At4g12250.1 68417.m01942 NAD-dependent epimerase/dehydratase fam... 31 0.58
At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase fam... 31 0.77
At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3... 31 1.0
At3g46440.1 68416.m05034 NAD-dependent epimerase/dehydratase fam... 31 1.0
At4g33030.1 68417.m04699 UDP-sulfoquinovose synthase / sulfite:U... 30 1.4
At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase fam... 30 1.4
At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase fam... 29 2.4
At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase fam... 29 2.4
At3g32180.1 68416.m04101 hypothetical protein 29 3.1
At1g68540.1 68414.m07830 oxidoreductase family protein similar t... 29 4.1
At3g58280.1 68416.m06497 hypothetical protein 28 5.5
At3g32160.1 68416.m04095 hypothetical protein 28 5.5
At2g43620.1 68415.m05422 chitinase, putative similar to basic en... 28 7.2
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat... 28 7.2
At4g33360.1 68417.m04743 terpene cyclase/mutase-related low simi... 27 9.5
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 27 9.5
At1g25460.1 68414.m03161 oxidoreductase family protein similar t... 27 9.5
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 27 9.5
>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 350
Score = 98.7 bits (235), Expect = 3e-21
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Frame = +1
Query: 268 ALQRAEKITGK---KITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXX 438
+LQR +K+ G+ +++F++ DL D+P + IF + D VIHFA LKAVGES+
Sbjct: 42 SLQRVKKLAGENGNRLSFHQVDLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLY 101
Query: 439 XXXXXXGMLNLLEIMRSHNCYQMGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERSTSS 618
G + LLE+M + C + A P+ + + +
Sbjct: 102 YNNNIVGTVTLLEVMAQYGCKNLVFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIE 161
Query: 619 RKCSKDLSAADDKWNIISLRYFNPVGAHPSGLIG 720
C +D+ +D +W II LRYFNPVGAHPSG IG
Sbjct: 162 EIC-RDVHRSDSEWKIILLRYFNPVGAHPSGYIG 194
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTNS 244
G +GYIGSH V+ LLE G+ + +DN+ NS
Sbjct: 9 GGAGYIGSHTVLQLLEGGYSAVVVDNYDNS 38
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 98.3 bits (234), Expect = 4e-21
Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Frame = +1
Query: 268 ALQRAEKIT---GKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXX 438
+LQR +K+ G++++F++ DL D+ + IF + D VIHFA LKAVGES+
Sbjct: 43 SLQRVKKLAAEHGERLSFHQVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLY 102
Query: 439 XXXXXXGMLNLLEIMRSHNCYQMGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERSTSS 618
G + LLE+M H C + A + P+ + +
Sbjct: 103 YNNNLVGTITLLEVMAQHGCKNLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIE 162
Query: 619 RKCSKDLSAADDKWNIISLRYFNPVGAHPSGLIG 720
C +D+ +D +W II LRYFNPVGAHPSG IG
Sbjct: 163 EIC-RDVYGSDPEWKIILLRYFNPVGAHPSGDIG 195
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTNS 244
G +GYIGSH V+ LL G+ V+ +DN NS
Sbjct: 10 GGAGYIGSHTVLQLLLGGYSVVVVDNLDNS 39
>At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082] (Plant Sci. 142, 147-154 (1999))
Length = 348
Score = 91.9 bits (218), Expect = 4e-19
Identities = 50/142 (35%), Positives = 69/142 (48%)
Frame = +1
Query: 295 GKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLL 474
G+ +T ++ DL DKP + +F + D V+HFA LKAVGES+ + LL
Sbjct: 54 GQNLTVHQVDLRDKPALEKVFSETKFDAVMHFAGLKAVGESVAKPLLYYNNNLIATITLL 113
Query: 475 EIMRSHNCYQMGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERSTSSRKCSKDLSAADD 654
E+M +H C ++ A PL + + C +D+ D
Sbjct: 114 EVMAAHGCKKLVFSSSATVYGWPKEVPCTEESPLSGMSPYGRTKLFIEDIC-RDVQRGDP 172
Query: 655 KWNIISLRYFNPVGAHPSGLIG 720
+W II LRYFNPVGAHPSG IG
Sbjct: 173 EWRIIMLRYFNPVGAHPSGRIG 194
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTNS 244
G +GYIGSH V+ LL G+ + IDN NS
Sbjct: 9 GGAGYIGSHTVLQLLLGGYNTVVIDNLDNS 38
>At1g12780.1 68414.m01484 UDP-glucose 4-epimerase / UDP-galactose
4-epimerase / Galactowaldenase identical to SP|Q42605
[GB:CAA90941] from [Arabidopsis thaliana] (Arch.
Biochem. Biophys. 327 (1), 27-34 (1996))
Length = 351
Score = 88.2 bits (209), Expect = 5e-18
Identities = 54/155 (34%), Positives = 71/155 (45%), Gaps = 4/155 (2%)
Frame = +1
Query: 268 ALQRAEKITG----KKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXX 435
A+ R ++ G KK+ F DL +K I +F K D VIHFA LKAVGES+
Sbjct: 46 AVDRVRELVGPDLSKKLDFNLGDLRNKGDIEKLFSKQRFDAVIHFAGLKAVGESVENPRR 105
Query: 436 XXXXXXXGMLNLLEIMRSHNCYQMGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERSTS 615
G +NL E M +NC M A L+ +
Sbjct: 106 YFDNNLVGTINLYETMAKYNCKMMVFSSSATVYGQPEKIPCMEDFELKAMNPY-GRTKLF 164
Query: 616 SRKCSKDLSAADDKWNIISLRYFNPVGAHPSGLIG 720
+ ++D+ A+ +W II LRYFNPVGAH SG IG
Sbjct: 165 LEEIARDIQKAEPEWRIILLRYFNPVGAHESGSIG 199
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +2
Query: 137 QEHISDGRSGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDETD 262
Q + G +G+IG+H VV LL+ G +V IDNF NSV + D
Sbjct: 7 QNILVTGGAGFIGTHTVVQLLKDGFKVSIIDNFDNSVIEAVD 48
>At1g63180.1 68414.m07140 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative strong similarity to SP|Q42605 [GI:1143392]
from [Arabidopsis thaliana] (Arch. Biochem. Biophys. 327
(1), 27-34 (1996))
Length = 351
Score = 85.0 bits (201), Expect = 4e-17
Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Frame = +1
Query: 268 ALQRAEKITGK----KITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXX 435
A+ R ++ G K+ F DL +K I +F D VIHFA LKAVGES+
Sbjct: 46 AVHRVRELVGPDLSTKLEFNLGDLRNKGDIEKLFSNQRFDAVIHFAGLKAVGESVGNPRR 105
Query: 436 XXXXXXXGMLNLLEIMRSHNCYQMGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERSTS 615
G +NL E M +NC M A L+ +
Sbjct: 106 YFDNNLVGTINLYETMAKYNCKMMVFSSSATVYGQPEIVPCVEDFELQAMNPY-GRTKLF 164
Query: 616 SRKCSKDLSAADDKWNIISLRYFNPVGAHPSGLIG 720
+ ++D+ AA+ +W II LRYFNPVGAH SG IG
Sbjct: 165 LEEIARDIHAAEPEWKIILLRYFNPVGAHESGRIG 199
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 137 QEHISDGRSGYIGSHCVVTLLEAGHEVIAIDNFTNSV 247
Q + G +G+IG+H VV LL G +V IDN NSV
Sbjct: 7 QNILVTGGAGFIGTHTVVQLLNQGFKVTIIDNLDNSV 43
>At1g30620.1 68414.m03745 UDP-D-xylose 4-epimerase, putative (MUR4)
similar to SP|P55180 UDP-glucose 4-epimerase (EC
5.1.3.2) from Bacillus subtilis, GI:3021357
UDP-galactose 4-epimerase from Cyamopsis tetragonoloba;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains TIGRfam profile
TIGR01179: UDP-glucose 4-epimerase
Length = 419
Score = 49.2 bits (112), Expect = 3e-06
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Frame = +1
Query: 301 KITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEI 480
++ F ADL D +N IF ++ D V+HFAA+ VGES L +LE
Sbjct: 123 RLQFIYADLGDAKAVNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLET 182
Query: 481 MRSHNCYQMGSRRHAQSTANLNTCRSRRLIPL-EVSQMFTAERSTSSRKCSKDL---SAA 648
M +H G + S + T ++P+ E + ++K ++D+ +
Sbjct: 183 MAAH-----GVKTLIYS-STCATYGEPDIMPITEETPQVPINPYGKAKKMAEDIILDFSK 236
Query: 649 DDKWNIISLRYFNPVGAHPSGLIG 720
+ ++ LRYFN +G+ P G +G
Sbjct: 237 NSDMAVMILRYFNVIGSDPEGRLG 260
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 510 FSSSCTVYGEPEHLPITETHPTGSITNVYGRTKYFIEEML 629
+SS+C YGEP+ +PITE P I N YG+ K E+++
Sbjct: 193 YSSTCATYGEPDIMPITEETPQVPI-NPYGKAKKMAEDII 231
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 119 RNNAAIQEHISDGRSGYIGSHCVVTLLEAGHEVIAIDNFT 238
R+ + + G +GYIGSH + LL+ + V +DN +
Sbjct: 65 RHEPGVTHVLVTGGAGYIGSHAALRLLKESYRVTIVDNLS 104
>At4g20460.1 68417.m02985 NAD-dependent epimerase/dehydratase family
protein similar to UDP-galactose 4-epimerase from
Cyamopsis tetragonoloba GI:3021357 [EMBL:AJ005082],
Bacillus subtilis SP|P55180; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 379
Score = 48.0 bits (109), Expect = 6e-06
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Frame = +1
Query: 301 KITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEI 480
++ F ADL D ++ IF ++ D V+HFAA+ VGES L +LE
Sbjct: 90 RLQFIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEA 149
Query: 481 MRSHNCYQMGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERSTSSRKCSKDL---SAAD 651
+ H ++ S+ ++ +EV+ ++K ++D+ + +
Sbjct: 150 VARHKV-----KKLIYSSTCATYGEPDKMPIVEVTPQVPINPYGKAKKMAEDMILDFSKN 204
Query: 652 DKWNIISLRYFNPVGAHPSGLIG 720
++ LRYFN +G+ P G +G
Sbjct: 205 SDMAVMILRYFNVIGSDPEGRLG 227
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 119 RNNAAIQEHISDGRSGYIGSHCVVTLLEAGHEVIAIDNFT 238
R+ + + G +GYIGSH + LL+ + V +DN +
Sbjct: 32 RSEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLS 71
>At5g44480.1 68418.m05450 NAD-dependent epimerase/dehydratase family
protein similar to SP|P55180 UDP-glucose 4-epimerase (EC
5.1.3.2) from Bacillus subtilis, GI:3021357
UDP-galactose 4-epimerase from Cyamopsis tetragonoloba;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 436
Score = 47.6 bits (108), Expect = 8e-06
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 3/153 (1%)
Frame = +1
Query: 271 LQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXX 450
LQ+ TG+ + F ADL D + IF ++ D V+HFAA+ VGES
Sbjct: 138 LQQLFPQTGR-LQFIYADLGDPLAVEKIFSENAFDAVMHFAAVAYVGESTLYPLKYYHNI 196
Query: 451 XXGMLNLLEIMRSHNCYQMGSRRHAQSTANLNTCRSRRLIPLEVSQMFTAERSTSSRKCS 630
L +LE M H ++ S+ ++ E + ++K +
Sbjct: 197 TSNTLGVLEAMARHKV-----KKLIYSSTCATYGEPEKMPITEDTPQVPINPYGKAKKMA 251
Query: 631 KDL---SAADDKWNIISLRYFNPVGAHPSGLIG 720
+D+ + + ++ LRYFN +G+ P G +G
Sbjct: 252 EDMILDFSKNSDMAVMILRYFNVIGSDPGGRLG 284
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +3
Query: 510 FSSSCTVYGEPEHLPITETHPTGSITNVYGRTKYFIEEML 629
+SS+C YGEPE +PITE P I N YG+ K E+M+
Sbjct: 217 YSSTCATYGEPEKMPITEDTPQVPI-NPYGKAKKMAEDMI 255
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFT 238
G +GYIGSH + LL + V +DN +
Sbjct: 101 GGAGYIGSHAALRLLRDSYRVTIVDNLS 128
>At2g34850.1 68415.m04279 NAD-dependent epimerase/dehydratase family
protein similar to UDP-galactose 4-epimerase from
Cyamopsis tetragonoloba GI:3021357, Lactococcus lactis
GI:3703056; contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 236
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 510 FSSSCTVYGEPEHLPITETHPTGSITNVYGRTKYFIEEML 629
+SS+C YGEPE +PITE P I N YG+ K E+++
Sbjct: 11 YSSTCATYGEPEKMPITEETPQVPI-NPYGKAKKMAEDII 49
>At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam
profile: PF01370 NAD dependent epimerase/dehydratase
family
Length = 460
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +1
Query: 265 PALQRA--EKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXX 438
P+L+RA E + +++ + DL D P + +FD P ++H AA V +M
Sbjct: 150 PSLKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSY 209
Query: 439 XXXXXXGMLNLLEIMRSHNCYQMGSRRHAQSTANLNT 549
G +NLLE+ ++ N + S LNT
Sbjct: 210 IASNIAGFVNLLEVAKAANPQPAIVWASSSSVYGLNT 246
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTN 241
G +G++GSHC + L + G V+ DNF +
Sbjct: 118 GAAGFVGSHCSLALRKRGDGVLGFDNFND 146
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 510 FSSSCTVYGEPEHLPITETHPTGSITNVYGRTKYFIEEM 626
++SS +VYG P +E H T ++Y TK EE+
Sbjct: 235 WASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGEEI 273
>At3g53520.2 68416.m05910 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 426
Score = 35.1 bits (77), Expect = 0.047
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNF 235
G +G++GSH V L+ G EVI IDNF
Sbjct: 126 GGAGFVGSHLVDKLIGRGDEVIVIDNF 152
>At3g53520.1 68416.m05909 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 345
Score = 35.1 bits (77), Expect = 0.047
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNF 235
G +G++GSH V L+ G EVI IDNF
Sbjct: 126 GGAGFVGSHLVDKLIGRGDEVIVIDNF 152
>At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 429
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 95 KVNGSKKLRNNAAIQEHISDGRSGYIGSHCVVTLLEAGHEVIAIDNFTN 241
+V S ++ + I ++ G +G++GSH + L + G V+ +DNF N
Sbjct: 75 QVRTSAQIHRSGGISVLVT-GATGFVGSHVSLALRKRGDGVVGLDNFNN 122
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 265 PALQRAEK--ITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXX 438
P+L+RA + ++ + I + DL D + +FD V+H AA V ++
Sbjct: 126 PSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSY 185
Query: 439 XXXXXXGMLNLLEIMRSHN 495
G++NLLEI ++ N
Sbjct: 186 VHSNIAGLVNLLEICKAAN 204
>At4g00110.1 68417.m00011 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 430
Score = 33.5 bits (73), Expect = 0.14
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +1
Query: 265 PALQRAEKITGKK--ITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXX 438
P+L+RA + ++ + + D+ D + +F+ P V+H AA V +M
Sbjct: 129 PSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSSY 188
Query: 439 XXXXXXGMLNLLEIMRSHNCYQMGSRRHAQSTANLNT 549
G +NLLE+ +S N + S LNT
Sbjct: 189 VHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNT 225
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 95 KVNGSKKLRNNAAIQEHISDGRSGYIGSHCVVTLLEAGHEVIAIDNFTN 241
+V S +LR ++ G +G++G+H L G V+ +DNF +
Sbjct: 78 RVRSSARLRTRRGFSVLVT-GAAGFVGTHVSAALKRRGDGVLGLDNFND 125
>At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains non-consensus AT
donor splice site at exon 1 and non-consensus AC
acceptor splice site at exon 2
Length = 443
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNF 235
G +G++GSH V L+ G VI +DNF
Sbjct: 127 GGAGFVGSHLVDRLMARGDNVIVVDNF 153
>At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains non-consensus CA
donor splice site at exon 1 and TA acceptor splice site
at exon 2
Length = 445
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNF 235
G +G++GSH V L+ G VI +DNF
Sbjct: 125 GGAGFVGSHLVDRLMARGDTVIVVDNF 151
>At2g27860.1 68415.m03377 expressed protein
Length = 389
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 155 GRSGYIGSH-CVVTLLEAGHEVIAIDNFTNSVEDETDP 265
G G+IGSH C L E H+V+A+D + + ++ +P
Sbjct: 24 GAGGFIGSHLCEKLLTETPHKVLALDVYNDKIKHLLEP 61
>At1g08200.1 68414.m00906 expressed protein
Length = 389
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 155 GRSGYIGSH-CVVTLLEAGHEVIAIDNFTNSVEDETDP 265
G G+IGSH C + E H+V+A+D + + ++ +P
Sbjct: 24 GAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEP 61
>At4g12250.1 68417.m01942 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 436
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +2
Query: 110 KKLRNNAAIQEH-----ISDGRSGYIGSHCVVTLLEAGHEVIAIDNF 235
K++R +A + H + G SG++G+H + L G V+ +DNF
Sbjct: 82 KQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLDNF 128
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +1
Query: 265 PALQRAEK--ITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXX 438
P L+RA + + + + D+ D + +FD V+H AA V +M
Sbjct: 134 PKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYAMQNPGSY 193
Query: 439 XXXXXXGMLNLLEIMRSHN 495
G +NLLE+ +S N
Sbjct: 194 VNSNIAGFVNLLEVSKSAN 212
>At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 434
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 95 KVNGSKKLRNNAAIQEHISDGRSGYIGSHCVVTLLEAGHEVIAIDNFTN 241
+V S ++R + ++ G +G++G+H L G V+ +DNF +
Sbjct: 79 RVRSSARVRTRNGVSVLVT-GAAGFVGTHVSAALKRRGDGVLGLDNFND 126
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +1
Query: 316 KADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHN 495
+ D+ D + +F+ P V+H AA V +M G +NLLE+ +S N
Sbjct: 149 EGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSAN 208
Query: 496 CYQMGSRRHAQSTANLNT 549
+ S LNT
Sbjct: 209 PQPAIVWASSSSVYGLNT 226
>At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3)
identical to UDP-glucuronic acid decarboxylase
[Arabidopsis thaliana] GI:14595666; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family; identical to cDNA UDP-glucuronic acid
decarboxylase (UXS3) GI:14595665
Length = 342
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +2
Query: 116 LRNNAAIQEHIS---DGRSGYIGSHCVVTLLE-AGHEVIAIDN-FTNSVED 253
LRN+ Q ++ G +G+IGSH V L+E +EV+ DN FT S E+
Sbjct: 20 LRNSKFCQPNMRILISGGAGFIGSHLVDKLMENEKNEVVVADNYFTGSKEN 70
>At3g46440.1 68416.m05034 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 341
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 116 LRNNAAIQEHIS---DGRSGYIGSHCVVTLLE-AGHEVIAIDNFTNSVED 253
LRN+ Q ++ G +G+IGSH V L+E +EVI DN+ +D
Sbjct: 19 LRNSKFCQSNMRILISGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKD 68
>At4g33030.1 68417.m04699 UDP-sulfoquinovose synthase /
sulfite:UDP-glucose sulfotransferase / sulfolipid
biosynthesis protein (SQD1) identical to gi:2736155
Length = 477
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 271 LQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESM 420
+ R + +TGK I Y D+ D + F D V+HF ++ SM
Sbjct: 141 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSM 190
>At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 437
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Frame = +2
Query: 110 KKLRNNAAIQEHISDG-------RSGYIGSHCVVTLLEAGHEVIAIDNFTN 241
K+LR++A I+ ++G +G++G+H L G VI +DNF +
Sbjct: 81 KRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFND 131
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Frame = +1
Query: 265 PALQRAEKITGKK--ITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXX 438
P+L+RA + ++ I + D+ D + +F V+H AA V +M
Sbjct: 135 PSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSY 194
Query: 439 XXXXXXGMLNLLEIMRSHNCYQMGSRRHAQSTANLNT 549
G +NLLEI +S N + S LNT
Sbjct: 195 VHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNT 231
>At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 116 LRNNAAIQEHIS---DGRSGYIGSHCVVTLLE-AGHEVIAIDNFTNSVED 253
LRN+ Q ++ G +G+IGSH V L++ +EVI DN+ +D
Sbjct: 21 LRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEVIVADNYFTGSKD 70
>At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 116 LRNNAAIQEHIS---DGRSGYIGSHCVVTLLE-AGHEVIAIDNFTNSVED 253
LRN+ Q ++ G +G+IGSH V L++ +EVI DN+ +D
Sbjct: 21 LRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEVIVADNYFTGSKD 70
>At3g32180.1 68416.m04101 hypothetical protein
Length = 100
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -1
Query: 716 ISPEGCAPTGLKYRREIMFHLSSAALKSLEHFLDEVLRSAVNICDTSSGMSLRD 555
+S +G P G+ + + FH S K F+D+V+ +CD + L++
Sbjct: 20 LSGDGFEPVGVLFPHAV-FHFPSKEKKEAYDFMDKVVDKHRRLCDERQRLGLKN 72
>At1g68540.1 68414.m07830 oxidoreductase family protein similar to
cinnamoyl CoA reductase [Eucalyptus gunnii, gi:2058311],
cinnamyl-alcohol dehydrogenase, E. gunnii [gi:1143445],
CPRD14 protein, Vigna unguiculata [gi:1854445]
Length = 321
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 134 IQEHISDGRSGYIGSHCVVTLLEAGHEV 217
+ E++ G +G+I S+ + +LLE GH V
Sbjct: 1 MSEYLVTGGTGFIASYIIKSLLELGHTV 28
>At3g58280.1 68416.m06497 hypothetical protein
Length = 196
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 256 DGSPALQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFA 393
D S LQ + +T + F D Q+NAIF+KHP D + +F+
Sbjct: 46 DSSEDLQNKDNVTIEVNGFQVLDS-QVDQVNAIFEKHP-DLISNFS 89
>At3g32160.1 68416.m04095 hypothetical protein
Length = 148
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = -1
Query: 716 ISPEGCAPTGLKYRREIMFHLSSAALKSLEHFLDEVLRSAVNICDTSSGMSLRDRQVFRF 537
+S +G P + + + FH K F+D+V+ +CD + L+ RQ+
Sbjct: 20 LSGDGFEPASVLFPHAV-FHFPLKDKKEAYDFMDKVVDKYRRLCDERQRLGLK-RQMLEA 77
Query: 536 AVDCA*RR 513
+ C R+
Sbjct: 78 RISCVERK 85
>At2g43620.1 68415.m05422 chitinase, putative similar to basic
endochitinase CHB4 precursor SP:Q06209 from [Brassica
napus]
Length = 283
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 342 NQCYFRQASCGLRDPFCGTQSSWGIDAATLIILPEQPAWDA 464
N C R CG D +CGT G +++ +P P+ A
Sbjct: 39 NLCCSRYGYCGTTDAYCGTGCRSGPCSSSTTPIPPTPSGGA 79
>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
similar to CLIP-associating protein CLASP2 (GI:13508651)
[Rattus norvegicus]
Length = 1439
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +3
Query: 411 GIDAATLIILPEQPAWDAQLIGDNAITQLLPNGFSSSCTVYGE--PEHLPITETHPTGSI 584
GI +A+ ++ P+ + G N+I++ PNG S + + + P HL + T S+
Sbjct: 1113 GISSASDLLNPKDSDYTFASAGQNSISRTSPNGSSENIEILDDLSPPHLEKNGLNLT-SV 1171
Query: 585 TNVYGR 602
++ GR
Sbjct: 1172 DSLEGR 1177
>At4g33360.1 68417.m04743 terpene cyclase/mutase-related low
similarity to squalene-hopene cyclase from Zymomonas
mobilis [SP|P33990]
Length = 344
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTNSVED 253
G +GY+G+ LL GH V A+ T+ + D
Sbjct: 19 GSTGYLGARLCHVLLRRGHSVRALVRRTSDLSD 51
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 404 QLGNRCSNPYYTTRTTCLGCSTYWR*C 484
Q+ R ++ TT TC+ C +W+ C
Sbjct: 352 QMQTRSADEPMTTYVTCVNCDNHWKFC 378
>At1g25460.1 68414.m03161 oxidoreductase family protein similar to
dihydroflavonol 4-reductase GI:1332411 from [Rosa
hybrida], cinnamoyl CoA reductase from Pinus taeda
[gi:17978649], Eucalyptus gunnii [gi:2058311]
Length = 320
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 140 EHISDGRSGYIGSHCVVTLLEAGHEV 217
E++ G + +I SH + +LLE GH V
Sbjct: 3 EYLVTGGTSFIASHVIKSLLEFGHYV 28
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 347 LICGLSSKSAL*NVIFFPVIFSALCKAGDPS 255
L C L K NV+ + V+ S LCK G S
Sbjct: 485 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLS 515
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,236,780
Number of Sequences: 28952
Number of extensions: 307675
Number of successful extensions: 819
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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