Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00683
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2...    71   1e-13
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    28   0.93 
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    27   1.2  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   5.0  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   6.6  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   6.6  
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    25   6.6  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.6  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   8.7  

>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 28/52 (53%), Positives = 40/52 (76%)
 Frame = +3

Query: 96  MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSY 251
           M +R    ++LE LQ++Y+G G+A TTKYEW++NQHRD+  S +GHP LL+Y
Sbjct: 1   MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAY 52



 Score = 35.9 bits (79), Expect = 0.004
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 269 ESKARVKFNLMERMLQPCGPPP 334
           E + +V+ NL+E+M+ PCGPPP
Sbjct: 59  EPRVQVRKNLLEKMIMPCGPPP 80


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 126 LEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFRS 260
           L+HLQ  Y  T       Y++   Q+  +C +Y G  DLL +FR+
Sbjct: 127 LQHLQEHYNITPERIAVLYKFAQFQY--NCGNYGGASDLLYHFRA 169


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 266 FLRSKVTQQIRMTHVTAARVAMLVHKPFI 180
           F   K+T  + MTH+ +A+   L +KP I
Sbjct: 365 FSSFKITTDLEMTHLESAKKKYLAYKPLI 393


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 424  YVMIRDSKSNNK*ISLILFLKSKRLIFRLFWRWAAWLKHSFHQIE 290
            Y  I D    N  +SL      K  +FR  WR A+W K S   ++
Sbjct: 985  YAEIDDRNPEN--VSLYHIALHKINVFRDLWRLASWHKESARTVK 1027


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -1

Query: 224 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 96
           +T   +A  ++ P  F   G  CA +FA  +  +   +   TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 331 RWAAWLKHSFHQIEFYARFRFIFYD 257
           +W  W+ H+FH I+     RF+  D
Sbjct: 429 QWKTWISHTFH-IDPMGPSRFVLMD 452


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 257 SKVTQQIRMTHVTAARVAMLVHKPFIFCSVG 165
           +K  + +R    +A R AML HKP +  S G
Sbjct: 162 AKTNEGVREVFESATRAAMLKHKPKVKPSSG 192


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -1

Query: 224 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 96
           +T   +A  ++ P  F   G  CA +FA  +  +   +   TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 155 HRPRRHYKI*MAYEPTSRLLLQLHGSS 235
           +RPR+ Y   +   PT  L+ Q+H  S
Sbjct: 249 YRPRKAYPTTLILAPTRELVCQIHEES 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,073
Number of Sequences: 5004
Number of extensions: 34839
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)