Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00683
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  29   2.2  
SB_42460| Best HMM Match : Peptidase_C16 (HMM E-Value=4.7)             27   6.8  
SB_12339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_7609| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.8  

>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +3

Query: 141 SKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSY 251
           S +   GH     YE  M QH  S C Y    D + Y
Sbjct: 887 SLWADQGHCKNVVYEDFMKQHCKSTCGYCACKDAIKY 923


>SB_42460| Best HMM Match : Peptidase_C16 (HMM E-Value=4.7)
          Length = 786

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 108 YNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYM--GHPDLLSY 251
           YN+      + S  I  GH D   Y +  +Q  D CC  +   +PD+ SY
Sbjct: 292 YNVTYDQADINSYTITYGHTDVDSYTFSYDQ-TDICCYSVTNDYPDIRSY 340


>SB_12339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +3

Query: 15  VISILAELEYKL*SLYDFNKHLAFKNKMGERYNI-HSQLEHLQSKYIGTGHADTTKYEWL 191
           VIS +A +EY+    Y   +H+ +++         H +  H++ +YI   H +    E+ 
Sbjct: 33  VISSIAYVEYR----YIEYRHIEYRHIEYRHIEYRHIEYRHIEYRYIKYRHIEYHHIEYR 88

Query: 192 MNQHRDSCCSYMGHPDLLSYFRS 260
             ++R    SY+  P   ++F+S
Sbjct: 89  YIEYRRFEYSYIEDPLYPTFFKS 111


>SB_7609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 108 YNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYM--GHPDLLSY 251
           YN+      + S  I  GH D   Y +  +Q  D CC  +   +PD+ SY
Sbjct: 177 YNVTYDQADINSYTITYGHTDVDSYTFSYDQ-TDICCYSVTNDYPDIRSY 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,305,532
Number of Sequences: 59808
Number of extensions: 241782
Number of successful extensions: 520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)