Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00683
         (509 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000198-1|AAH00198.1|   86|Homo sapiens splicing factor 3b, sub...   105   9e-23
AL031390-2|CAI19755.1|   86|Homo sapiens splicing factor 3b, sub...   105   9e-23

>BC000198-1|AAH00198.1|   86|Homo sapiens splicing factor 3b,
           subunit 5, 10kDa protein.
          Length = 86

 Score =  105 bits (252), Expect = 9e-23
 Identities = 45/53 (84%), Positives = 49/53 (92%)
 Frame = +3

Query: 96  MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYF 254
           M +RY IHSQLEHLQSKYIGTGHADTTK+EWL+NQHRDS CSYMGH DLL+YF
Sbjct: 1   MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYF 53



 Score = 62.5 bits (145), Expect = 8e-10
 Identities = 26/41 (63%), Positives = 32/41 (78%)
 Frame = +2

Query: 227 GSSGFVELLSIVENESKARVKFNLMERMLQPCGPPPEKPED 349
           G    +   +I ENESKARV+FNLME+MLQPCGPP +KPE+
Sbjct: 45  GHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85


>AL031390-2|CAI19755.1|   86|Homo sapiens splicing factor 3b,
           subunit 5, 10kDa protein.
          Length = 86

 Score =  105 bits (252), Expect = 9e-23
 Identities = 45/53 (84%), Positives = 49/53 (92%)
 Frame = +3

Query: 96  MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYF 254
           M +RY IHSQLEHLQSKYIGTGHADTTK+EWL+NQHRDS CSYMGH DLL+YF
Sbjct: 1   MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYF 53



 Score = 62.5 bits (145), Expect = 8e-10
 Identities = 26/41 (63%), Positives = 32/41 (78%)
 Frame = +2

Query: 227 GSSGFVELLSIVENESKARVKFNLMERMLQPCGPPPEKPED 349
           G    +   +I ENESKARV+FNLME+MLQPCGPP +KPE+
Sbjct: 45  GHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,488,317
Number of Sequences: 237096
Number of extensions: 1138869
Number of successful extensions: 2177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2177
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)