Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00683
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-3|AAA62525.1|   87|Caenorhabditis elegans Hypothetical pr...    36   0.023
AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical...    28   4.5  
Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U21317-3|AAA62525.1|   87|Caenorhabditis elegans Hypothetical
           protein B0495.6 protein.
          Length = 87

 Score = 35.5 bits (78), Expect = 0.023
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +3

Query: 99  GERYNIHSQLEHLQSKYIGT 158
           GER+++ +QLEHLQSKY GT
Sbjct: 5   GERFHVLAQLEHLQSKYTGT 24


>AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical
           protein C05C8.8 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 6/141 (4%)
 Frame = +3

Query: 93  KMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFRS*KMN 272
           K  +   I   +EH   K +   H      +W++N   D    Y G  D+L + R    N
Sbjct: 195 KKSKWLEIVEYVEHY--KLVDCHHRSRHHSKWVINVDIDERIIYTGSNDILYFLRQDFSN 252

Query: 273 LKRA--*NSI*WN----ECFNHAAHRQKSLKIKRFDFKNRIKLIYLLFDFESLIMT*IRA 434
           L +A   N I       E   + A+ Q  L   +++    +      ++F+ +I   +  
Sbjct: 253 LSKAITANRILTTGTIPEKLKNFANLQSELTFLKYNKTTEVS----WYNFKGIIRPDLVY 308

Query: 435 VCFHFYNL*QTPLVYSIVPPK 497
           V F+ ++  Q P V+ I  PK
Sbjct: 309 VLFYHWSFRQKPNVHVISIPK 329


>Z70782-6|CAA94844.1|  337|Caenorhabditis elegans Hypothetical
           protein R04B5.8 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 272 IHFLRSKVTQQIRMTHVTAARVAMLVHKPFIFCSV 168
           + + R K+    +++ V   R  ++VH P IFC++
Sbjct: 112 VFYYRYKILSHQKLSSVQIMRNFIIVHLPAIFCAI 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,180,529
Number of Sequences: 27780
Number of extensions: 190762
Number of successful extensions: 494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)