Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00682
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   2.6  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   3.4  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    26   4.5  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    26   4.5  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    25   7.9  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 110 CLRAHGVHQSSGVHI 154
           C+R  GVH+S GVH+
Sbjct: 49  CIRCSGVHRSLGVHV 63


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 51  LLEEKGISNEFVQKLSDFSTAYEHTAYINLLESISK 158
           LL +K  S   ++KL D  +      ++NLLE ISK
Sbjct: 13  LLNQKNDSRPVIEKLKDNISGDLLNYFLNLLEEISK 48


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 412 DTYKIKAKTVRVNIYLYSYIRLLTNGEKSFETLYFQT 522
           D YK K + V   I+++SY+ LL   +      +F++
Sbjct: 76  DLYKPKLQKVLYPIFVHSYLDLLQKNDPEMAIYFFES 112


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 188 TKILNNIQTFHFFLNTLFQ 244
           TK++ N   FH+FL+T FQ
Sbjct: 67  TKLVENNDVFHWFLSTNFQ 85


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 54  LEEKGISNEFVQKLSDFSTAYEHTAYINLLESISKF 161
           LEE+ I       +  F    E   YIN LES+ +F
Sbjct: 232 LEERKIDESLSSFIVSFGLTKELKEYINWLESVRQF 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,241
Number of Sequences: 5004
Number of extensions: 53221
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)