Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00682
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U43375-6|AAA83623.2|  515|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC024832-1|AAK71408.1|  167|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical
           protein F59A2.3 protein.
          Length = 236

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +3

Query: 54  LEEKGISNEFVQKLSDFSTAYEHTAYINLLESISKF 161
           LEE+G+   F + L  ++T YEH+ Y+ LL+ I KF
Sbjct: 198 LEERGLDARFCKTLVAYATHYEHSQYVGLLDKIKKF 233


>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 424 IKAKTVRVNIYLYSYIRLLTNGEKSFETLYFQTNN 528
           IK+    +  YL  ++RLLT G+K    ++ Q+ N
Sbjct: 303 IKSYRNAITQYLTDFLRLLTCGKKHLNVIHVQSRN 337


>U43375-6|AAA83623.2|  515|Caenorhabditis elegans Hypothetical
           protein K09C4.5 protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 618 FMLCSFYVTNDRKY*IMFWRFVTLLLGAIVVI 523
           F+L  F  T  RKY ++++RF+  ++ ++ +I
Sbjct: 78  FVLVPFAETKGRKYTVVYFRFIISVVSSLCII 109


>AC024832-1|AAK71408.1|  167|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.4 protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +1

Query: 94  CQTSVLPTSTRRTSIFWSPYLNSPSENNVTSN*NFK*HTNISFFFKYLVSN-YIILFASS 270
           C+T+ L  S +    FW+   +SP+   VTS+      + I+ F   L    +  + A++
Sbjct: 45  CRTAALSPSLKLAKNFWNSIFSSPA---VTSSGRSVTPSEINPFSTSLGEKIWPSVLANA 101

Query: 271 VQLKFRKSNCYRS--NNSTFIINGGNFDSYIVLHLLILS 381
            Q K +    +++  NN  F  N   F   + + +L+ S
Sbjct: 102 TQQKIKSRENFKNMRNNLHFFCNHSTFIKILFIGILMTS 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,019
Number of Sequences: 27780
Number of extensions: 291389
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)