Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00682
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66440.1 68414.m07548 DC1 domain-containing protein contains ...    29   3.9  
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR...    27   9.1  
At5g16800.2 68418.m01967 GCN5-related N-acetyltransferase (GNAT)...    27   9.1  
At5g16800.1 68418.m01968 GCN5-related N-acetyltransferase (GNAT)...    27   9.1  

>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 726

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 400 LLLLIEDLKSTNAAQCNCQNSRHLL*MYYCWIC 302
           L L++E+       +C C +   L   YYCW+C
Sbjct: 236 LQLILENSWGCRKKKCYCCDEILLWIFYYCWVC 268


>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1127

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 215  MFVCYLKF*FEVTLFSDGEFRYGLQKIDVR 126
            +F CY  F  E T F DG+F Y    I  R
Sbjct: 1032 VFDCYFPFNEEFTTFLDGQFNYDHVDIQFR 1061


>At5g16800.2 68418.m01967 GCN5-related N-acetyltransferase (GNAT)
           family protein very low similarity to SP|P39909
           Spermine/spermidine acetyltransferase (EC 2.3.1.57)
           {Bacillus subtilis}; contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 270

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 268 SVQLKFRKS-NCYRSNNSTFIINGGNFDSYIVLHLL 372
           +++L  R S  C R  +  ++ING +FDSY+ ++ +
Sbjct: 162 AIRLYKRMSFRCVRRLHGFYLINGQHFDSYLFVYFI 197


>At5g16800.1 68418.m01968 GCN5-related N-acetyltransferase (GNAT)
           family protein very low similarity to SP|P39909
           Spermine/spermidine acetyltransferase (EC 2.3.1.57)
           {Bacillus subtilis}; contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 236

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 268 SVQLKFRKS-NCYRSNNSTFIINGGNFDSYIVLHLL 372
           +++L  R S  C R  +  ++ING +FDSY+ ++ +
Sbjct: 162 AIRLYKRMSFRCVRRLHGFYLINGQHFDSYLFVYFI 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,134,116
Number of Sequences: 28952
Number of extensions: 246606
Number of successful extensions: 467
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)