Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00681
         (379 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4 p...    21   3.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   7.2  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    20   7.2  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    20   7.2  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    20   9.5  

>AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4
           protein.
          Length = 23

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 102 GSGGSVMTCFGRRRRI 55
           G GG   T  GRRRR+
Sbjct: 7   GDGGRPETSSGRRRRL 22


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 286 TLTRAVFAESTPDRTRDPLRRSDEKLSE 203
           TLT        PD  +D LRR +  L +
Sbjct: 129 TLTPCASPNRKPDDNQDHLRRLEMSLEK 156


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 127 KHRSQSSPNPSLARRAR 177
           KH++  S NP   RR R
Sbjct: 76  KHKADISGNPRALRRLR 92


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 127 KHRSQSSPNPSLARRAR 177
           KH++  S NP   RR R
Sbjct: 76  KHKADISGNPRALRRLR 92


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 131 CLWYLKAPLMDRED 90
           C WY+   L  R+D
Sbjct: 460 CFWYVPKSLRGRKD 473


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,688
Number of Sequences: 336
Number of extensions: 1183
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)