Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00681
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   0.56 
SPAC22G7.11c ||SPAC4G8.01c|conserved fungal protein|Schizosaccha...    26   2.3  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    26   2.3  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   3.9  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   3.9  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   5.2  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    24   6.9  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.9 bits (59), Expect = 0.56
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 74  KHVITDPPDPLTVLLGTTSTGH--SPRRTRRLREGLDERINLQT 199
           +H++ +PP PLTVL      GH    R+  +L +   ER+  +T
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGHVYEQRKEYKLAKEAYERVLAET 542


>SPAC22G7.11c ||SPAC4G8.01c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 95  PDPLTVLLGTTSTGHSPRRTRRLREGLDERI 187
           PDP  VL G  +T H+P  +++ +E  ++ I
Sbjct: 2   PDPNRVLAGKKATLHNPNVSQQAKERAEDYI 32


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -3

Query: 293 NTDPNKSSV--RRIYTGSDTRPTE 228
           NTD  K  +  ++IY GSD +PTE
Sbjct: 230 NTDVTKIDLAEKKIYCGSDEKPTE 253


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 246 RSGVDSANTALVRVSVGNTPV*AR*AHLLVKVEIASQGS 362
           ++GVD+  +     S G  P+ A+ AH  V+VE+A   +
Sbjct: 149 QNGVDTTTSRQKLHSSGRFPLPAKLAHRSVEVEVAESNA 187


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 61  STSPKTRHYGSSRSINGAFRYHKHRSQSSPN-PSLARRARRAN*PTDTAH 207
           +++PK   Y S+ + + +    + R+ SSP  PS A R    + PT  +H
Sbjct: 140 ASAPKHDLYSSANASSASLHPTEQRTTSSPTIPSYANRTHTDS-PTSLSH 188


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 265 AESTPDRTRDPLRRSDEKLSELCL*VNSLVEPFSQ 161
           A STP +T + L     +  E+ L  NSL+EP  +
Sbjct: 221 APSTPPKTVNELPEQIYEKPEIVLQPNSLIEPLGK 255


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 298 LPTLTLTRAVFAESTPDRTRDPLRRSDEKL 209
           +P L LTR+   E TP RT  P+    + +
Sbjct: 78  VPRLILTRSNSQEQTPLRTHTPVEYMSDSI 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,040
Number of Sequences: 5004
Number of extensions: 22444
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)