Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00681
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0131 - 15576422-15577021                                         29   1.6  
08_02_0798 - 21310821-21310884,21310907-21311175                       28   2.1  
01_01_0012 + 71903-72935,73468-73981,74619-76008                       27   4.9  
12_01_0924 + 9161155-9161646,9161748-9162164,9162250-9162313,916...    27   6.5  
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310...    26   8.6  
07_03_1494 - 26976654-26976749,26976945-26977001,26977644-269777...    26   8.6  
04_03_0874 + 20467608-20468306,20468575-20468736,20470083-204701...    26   8.6  

>02_03_0131 - 15576422-15577021
          Length = 199

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 73  KTRHYGSSRSINGAFRYHKHRSQSSPNPSLARRARR 180
           ++R   + RS       H HR +SSP+P   R  RR
Sbjct: 64  RSRSPSADRSHRRHSHSHSHRGRSSPSPDAGRHKRR 99


>08_02_0798 - 21310821-21310884,21310907-21311175
          Length = 110

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 371 PKL*ALRGYFNLN**VSSPGSNRSVANTDPNKSSVRRIYTGSDTRPTEKIRRETQ 207
           P++ A     NLN   +  G + S ++ DPN+ S RR+  GSD     + +R+ +
Sbjct: 46  PRVLAQSNAANLN---NKGGYSASPSSADPNRMSERRVRRGSDPIHNREDQRQQE 97


>01_01_0012 + 71903-72935,73468-73981,74619-76008
          Length = 978

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 55  NSSTSPKTRHYGSSRSINGAFRYHKHRSQSSPNPSLARRARRA 183
           N S S   RH  SSRS + + + H+  S S   PS +RR+ RA
Sbjct: 602 NRSRSISPRHKKSSRSDSRSPKRHREESLS---PSKSRRSARA 641


>12_01_0924 +
           9161155-9161646,9161748-9162164,9162250-9162313,
           9162621-9163030
          Length = 460

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -1

Query: 178 VEPFSQATGSAR----TVTGACGT*KHR*WIGRIRNDVFW 71
           +  FSQ   S R     +T A G  +HR WI  I +D+ W
Sbjct: 164 IRQFSQEVSSQRWDDDILTVALGNEEHRGWISGIGSDIPW 203


>09_02_0027 +
           3105963-3106276,3106298-3107027,3107069-3107134,
           3107192-3107324,3108985-3109088
          Length = 448

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 173 ALLASDGFGEDCDRCLWYLKAPLMDREDP**RV-LGDVDEFIKSTLVT 33
           A+ A   F    D+ L+   AP  D  D   ++ +GDVD  +KS+L+T
Sbjct: 38  AIPAPPTFKTMADKTLYEFAAPSTDNVDIGLQINMGDVDFDLKSSLIT 85


>07_03_1494 -
           26976654-26976749,26976945-26977001,26977644-26977712,
           26977892-26977993,26978081-26978149,26979205-26979297,
           26979908-26979959,26980549-26980635,26980720-26980802,
           26980909-26981040,26981132-26981205,26981280-26981341,
           26981428-26981513
          Length = 353

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 59  RRRRPKHVITDPPDPLT 109
           R RRP H++  PP PLT
Sbjct: 13  RLRRPLHLLHPPPPPLT 29


>04_03_0874 +
           20467608-20468306,20468575-20468736,20470083-20470160,
           20470636-20470714,20470809-20470954,20471064-20471132,
           20471262-20471430,20471526-20471776
          Length = 550

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = -3

Query: 323 SSPGSNRSVANTDPNKSSVRRIYTGSDTRPTEKIRRETQ*AVSVG*FARRALLASDGFGE 144
           + P S+ +++ +  +  +  R+       P   + R  Q  +++G    + + A   FGE
Sbjct: 460 AEPSSSAAISGSSRSAGTADRVGEECFVLPDTVLTRSMQLLLAMGFNYIQVMEAYSIFGE 519

Query: 143 DCDRCLWYL 117
           D D  ++YL
Sbjct: 520 DVDSMIYYL 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,292,382
Number of Sequences: 37544
Number of extensions: 169543
Number of successful extensions: 532
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)