Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00681
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57683| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)               27   6.7  
SB_35792| Best HMM Match : His_leader (HMM E-Value=3.5)                26   8.8  
SB_9915| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.8  

>SB_57683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 173 LDERINLQTQLTEFLVGSSQWVACPIRCRFCEHC 274
           +DE   +QT++   ++G+ +W     RC  CE C
Sbjct: 83  IDECCKVQTKVLRAILGNIRWFESDYRC-LCEDC 115


>SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 58  SSTSPKTRHYGSSRSINGAFRYHKHRSQSSPNPSLARRARRAN 186
           S  S KT       S+    +Y+K+ ++SSPN S   R R  N
Sbjct: 747 SRCSQKTSSLAIDDSLTRGNKYNKNGAESSPNVSPVTRRRSPN 789


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 106 NGAFRYHKHRSQSSPNPSL 162
           N  +RYH HR +S+P+ S+
Sbjct: 204 NQRYRYHAHRRRSAPSASI 222


>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
          Length = 602

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 121 YHKHRSQSSPNPSLARRARRAN 186
           +  HRS S P+PS + R  RAN
Sbjct: 344 HDNHRSNSHPDPSHSARTMRAN 365


>SB_35792| Best HMM Match : His_leader (HMM E-Value=3.5)
          Length = 168

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 89  DPPDPLTVLLGTTSTGHSPRRTRRLREGLD 178
           D PD  T  +G T+TG++ R  R +R   D
Sbjct: 135 DIPDAATHAIGPTTTGYTTRSGRPIRAQTD 164


>SB_9915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 116 LGTTSTGHSPRRTRRLREGLDERINLQTQLTEFLVGSSQWVACPIRCRFCEHC 274
           L TT+T  +  +T    E  D +  L+  +T  ++   +W+     CR   HC
Sbjct: 231 LATTATRTTATKTNETFEEPDVKYTLKWNVTTPILTIKRWLRNEHACRRNNHC 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,436,995
Number of Sequences: 59808
Number of extensions: 185560
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)