Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00681
         (379 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK096586-1|BAC04823.1|  441|Homo sapiens protein ( Homo sapiens ...    31   1.6  
D50370-1|BAA08904.1|  506|Homo sapiens nucleosome assembly prote...    28   8.8  
BC034954-1|AAH34954.1|  506|Homo sapiens nucleosome assembly pro...    28   8.8  
AL009173-1|CAA15661.1|  506|Homo sapiens nucleosome assembly pro...    28   8.8  
AK223621-1|BAD97341.1|  506|Homo sapiens nucleosome assembly pro...    28   8.8  

>AK096586-1|BAC04823.1|  441|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39267 fis, clone OCBBF2010313. ).
          Length = 441

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 182 RINLQTQLTEFLVGSSQWVACPIRCRFCEHCS 277
           +++L+T   E L G  + VAC +R ++C+H S
Sbjct: 391 KLHLETFAMEGLKGGPEVVACQVRVQWCDHSS 422


>D50370-1|BAA08904.1|  506|Homo sapiens nucleosome assembly protein
           protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 37  TSVLLMNSSTSPKTRHYGSSRSINGAF--RYHKHRSQSSPNPSLARRARRA 183
           TS    +SSTS  +   GSS S +G+   R   +R +  P PS  RRARRA
Sbjct: 42  TSDSSSSSSTSGSSSGSGSSSSSSGSTSSRSRLYRKKRVPEPS--RRARRA 90


>BC034954-1|AAH34954.1|  506|Homo sapiens nucleosome assembly
           protein 1-like 3 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 37  TSVLLMNSSTSPKTRHYGSSRSINGAF--RYHKHRSQSSPNPSLARRARRA 183
           TS    +SSTS  +   GSS S +G+   R   +R +  P PS  RRARRA
Sbjct: 42  TSDSSSSSSTSGSSSGSGSSSSSSGSTSSRSRLYRKKRVPEPS--RRARRA 90


>AL009173-1|CAA15661.1|  506|Homo sapiens nucleosome assembly
           protein 1-like 3 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 37  TSVLLMNSSTSPKTRHYGSSRSINGAF--RYHKHRSQSSPNPSLARRARRA 183
           TS    +SSTS  +   GSS S +G+   R   +R +  P PS  RRARRA
Sbjct: 42  TSDSSSSSSTSGSSSGSGSSSSSSGSTSSRSRLYRKKRVPEPS--RRARRA 90


>AK223621-1|BAD97341.1|  506|Homo sapiens nucleosome assembly
           protein 1-like 3 variant protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 37  TSVLLMNSSTSPKTRHYGSSRSINGAF--RYHKHRSQSSPNPSLARRARRA 183
           TS    +SSTS  +   GSS S +G+   R   +R +  P PS  RRARRA
Sbjct: 42  TSDSSSSSSTSGSSSGSGSSSSSSGSTSSRSRLYRKKRVPEPS--RRARRA 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,289,993
Number of Sequences: 237096
Number of extensions: 871969
Number of successful extensions: 1900
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1900
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)