Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00681
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p...    27   3.4  
Z83226-2|CAB05723.1|  211|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z50028-5|CAA90338.1|  661|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AL032624-4|CAA21522.1|  661|Caenorhabditis elegans Hypothetical ...    26   7.8  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 1   RHEDARMLRF*VTSVLLMNSSTSPKTRHYGSSRSINGAFRYHKHRSQS-SPNPSLAR 168
           RHE+A + +  + SV     S SP+ R   S+       R  +  SQS SP P  A+
Sbjct: 279 RHEEAELRQKAIASVAARAKSGSPRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAK 335


>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
           protein F27C1.11 protein.
          Length = 1037

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 52  MNSSTSPKTRHYGSSRSINGAFRYHKHRSQSSPNPSLARRARRAN 186
           M+S+ S KT+  G   S+N + +  +H   +     + R   R N
Sbjct: 252 MSSAESNKTKDSGKGTSLNNSQQSERHEKMTEKKAQMIREELRTN 296


>Z83226-2|CAB05723.1|  211|Caenorhabditis elegans Hypothetical
           protein F43D2.3 protein.
          Length = 211

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +2

Query: 11  MRGCCASKLLACS**IRRRRPKHVITDPPDPLTVLLGTTSTGHSPRRTRRLR 166
           +RGC  +K++A +   R+R+    + D PD       TTST  SPRR+ R+R
Sbjct: 15  LRGC--AKMIAMNTG-RKRKLTEDLPDTPDDNQ----TTSTNMSPRRSVRIR 59


>Z50028-5|CAA90338.1|  661|Caenorhabditis elegans Hypothetical
           protein F46F6.1a protein.
          Length = 661

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 277 RAVFAESTPDRTRDPLRRSDE 215
           R VFAE  PD TR P   SD+
Sbjct: 159 RVVFAEKIPDHTRLPTLGSDK 179


>AL032624-4|CAA21522.1|  661|Caenorhabditis elegans Hypothetical
           protein F46F6.1a protein.
          Length = 661

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 277 RAVFAESTPDRTRDPLRRSDE 215
           R VFAE  PD TR P   SD+
Sbjct: 159 RVVFAEKIPDHTRLPTLGSDK 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,467,520
Number of Sequences: 27780
Number of extensions: 130859
Number of successful extensions: 397
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)