Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00681
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 70  PKTRHYGSSRSINGAFRYHKHRSQSSPNPSLARRARRAN*PTDT 201
           P  R   S  + +G    H+     +P P    R R+ + P+D+
Sbjct: 537 PHRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDS 580


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  TSVLLMNSSTSPKTRHYGSSRSIN 108
           TSV+ M+ +T P T    SS SIN
Sbjct: 844 TSVISMSGTTVPITSLPASSTSIN 867


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 37  TSVLLMNSSTSPK 75
           TS++LMN +T P+
Sbjct: 279 TSIILMNGTTLPQ 291


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 83   ITDPPDPLTVLLGTTSTGHSPRRTRRLREGLDER 184
            +T PP PL++    +    S R + +L     ER
Sbjct: 1394 LTSPPTPLSISRAGSRDEDSTRDSTKLDRSSRER 1427



 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 254 TGSDTRPTEKIRRETQ 207
           TG+ T PT ++R+  Q
Sbjct: 256 TGTTTIPTRRLRKRRQ 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,040
Number of Sequences: 438
Number of extensions: 1462
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)