Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00681
(379 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27350.2 68415.m03292 OTU-like cysteine protease family prote... 29 1.4
At2g27350.1 68415.m03291 OTU-like cysteine protease family prote... 29 1.4
At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containi... 29 1.4
At1g79190.1 68414.m09233 expressed protein 27 4.1
At3g10800.1 68416.m01300 bZIP transcription factor family protei... 27 5.5
At1g52140.1 68414.m05883 expressed protein 27 5.5
At2g27350.3 68415.m03293 OTU-like cysteine protease family prote... 26 7.2
At1g48090.2 68414.m05363 C2 domain-containing protein contains P... 26 7.2
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 26 7.2
At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family pr... 26 7.2
At5g41330.1 68418.m05023 potassium channel tetramerisation domai... 26 9.6
At4g36980.1 68417.m05240 expressed protein 26 9.6
At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase f... 26 9.6
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r... 26 9.6
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 26 9.6
At1g73130.1 68414.m08456 expressed protein 26 9.6
At1g11905.1 68414.m01373 expressed protein 26 9.6
>At2g27350.2 68415.m03292 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 28.7 bits (61), Expect = 1.4
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = -3
Query: 302 SVANTDPNKSSVRRIYTGSDTRPTEKIRRET------Q*AVSVG*FARRALLASDGFGED 141
S +N + + S R +GSD++P E ++ +T + +S+G +A+ A FG+D
Sbjct: 423 STSNAETSSSGARP--SGSDSKPAEAVKEKTVLSSSIEMVLSMGFSYAQAMEAYSIFGDD 480
Query: 140 CDRCLWYL 117
D + Y+
Sbjct: 481 VDSMVCYV 488
>At2g27350.1 68415.m03291 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 28.7 bits (61), Expect = 1.4
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = -3
Query: 302 SVANTDPNKSSVRRIYTGSDTRPTEKIRRET------Q*AVSVG*FARRALLASDGFGED 141
S +N + + S R +GSD++P E ++ +T + +S+G +A+ A FG+D
Sbjct: 423 STSNAETSSSGARP--SGSDSKPAEAVKEKTVLSSSIEMVLSMGFSYAQAMEAYSIFGDD 480
Query: 140 CDRCLWYL 117
D + Y+
Sbjct: 481 VDSMVCYV 488
>At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 681
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 95 PDPLTVLLGTTSTGHSPRRTRRLREGLDERIN 190
P PLT L + HS RRTR L D+ IN
Sbjct: 12 PPPLTPKLNRSLYSHSQRRTRSLPHHRDKPIN 43
>At1g79190.1 68414.m09233 expressed protein
Length = 1274
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 313 AQTGVLPTLTLTRAVFAESTPDRTRDPLRRSDEKLSELCL*VNSLV 176
+ TG LP++T + F E+ +R + +D+KL E+ + LV
Sbjct: 536 SSTGYLPSITELKVGFRETRYNRAVPNITETDQKLYEMLAGILRLV 581
>At3g10800.1 68416.m01300 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; contains similarity to TGACG-sequence specific
DNA-binding protein TGA-1B (HSBF) GB:P14233 [Nicotiana
tabacum]
Length = 675
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 326 VSSPGSNRSVANTDPNKSSVRRIYTGSDTRPT 231
VS S ++ T PNK + + + G+ +PT
Sbjct: 581 VSLVASELNITGTQPNKDAQNKTFNGNTNKPT 612
>At1g52140.1 68414.m05883 expressed protein
Length = 208
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 83 ITDPPDPLTVLLGTTSTGHSPRRTRRLREGLDERINLQTQLTEF 214
+TD P PLT G + GH + + + +N Q ++ EF
Sbjct: 164 VTDSPFPLTPENGDVANGHVDKAADDFIKKFYKNLNQQKKMIEF 207
>At2g27350.3 68415.m03293 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 506
Score = 26.2 bits (55), Expect = 7.2
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = -3
Query: 314 GSNRSVANTDPNKSSVRRIYTGSDTRPTEKIRRET------Q*AVSVG*FARRALLASDG 153
G S + SS +GSD++P E ++ +T + +S+G +A+ A
Sbjct: 418 GPKESSTSNAETSSSGATGPSGSDSKPAEAVKEKTVLSSSIEMVLSMGFSYAQAMEAYSI 477
Query: 152 FGEDCDRCLWYL 117
FG+D D + Y+
Sbjct: 478 FGDDVDSMVCYV 489
>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 3427
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 79 RHYGSSRSINGAFRYHKHRSQSSPNPSL 162
RHY S ING+ +YH+ +Q NP +
Sbjct: 312 RHYLLS-PINGSLKYHRLGNQERNNPEI 338
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 79 RHYGSSRSINGAFRYHKHRSQSSPNPSL 162
RHY S ING+ +YH+ +Q NP +
Sbjct: 312 RHYLLS-PINGSLKYHRLGNQERNNPEI 338
>At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family
protein / U-box domain-containing family protein
contains Pfam domain, PF00514:
Armadillo/beta-catenin-like repeats and Pfam, PF04564:
U-box domain
Length = 771
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 34 VTSVLLMNSSTSPKTRHYGSSRSINGAFRYHKHRSQSSPNPSLARR 171
+ S++ ++ + SP+ R S+ + FR +HR Q SPN A R
Sbjct: 679 IPSLVSISVNGSPRGRD--KSQKLLMLFREQRHRDQPSPNKEEAPR 722
>At5g41330.1 68418.m05023 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 458
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +2
Query: 95 PDPLTVLLGTTSTGHSPRRTRR--LREGLDER--INLQTQLTEFLVGSSQWVACPIR 253
PD +VLL TG+ P R+R +R+ +DE +++ L + L SSQ+ +R
Sbjct: 53 PDLFSVLLYILRTGNLPARSRAFDVRDLIDESRYYGIESFLIDSLSNSSQFEPFDLR 109
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 49 LMNSSTSPKTRHYGSSRSINGAFRYHKHRSQSSPNPSLARRARR 180
L +S + R SRSI+ + +HR S + S +RR+RR
Sbjct: 471 LAETSRLSRNRQRSRSRSISRSPPPRRHRRSRSRSGSRSRRSRR 514
>At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase
family protein contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 367
Score = 25.8 bits (54), Expect = 9.6
Identities = 16/75 (21%), Positives = 30/75 (40%)
Frame = +2
Query: 77 HVITDPPDPLTVLLGTTSTGHSPRRTRRLREGLDERINLQTQLTEFLVGSSQWVACPIRC 256
H++T PP T +LG +T + L+ I++ + L S + + C
Sbjct: 255 HILTTPPHVFTTVLGWQNTCETVEDIAATLAALNTEIDINI-MYRGLDPKSTYSLVSVVC 313
Query: 257 RFCEHCSC*GQCWQH 301
+ +H C +H
Sbjct: 314 YYGQHYHCFAHSREH 328
>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1568
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/81 (18%), Positives = 33/81 (40%)
Frame = +2
Query: 59 RRRRPKHVITDPPDPLTVLLGTTSTGHSPRRTRRLREGLDERINLQTQLTEFLVGSSQWV 238
+R H++T PP T++LG +T + L+ I++ + + + +
Sbjct: 1449 KRNHIHHILTTPPHVFTIVLGWQNTCETVEDIAATLAALNTEIDISI-MYRGVDPKNTYS 1507
Query: 239 ACPIRCRFCEHCSC*GQCWQH 301
+ C + +H C +H
Sbjct: 1508 LVSVVCYYGQHYHCFAYSHEH 1528
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 236 VACPIRCRFCEHCS 277
VACPI CR HCS
Sbjct: 5 VACPITCRRICHCS 18
>At1g73130.1 68414.m08456 expressed protein
Length = 646
Score = 25.8 bits (54), Expect = 9.6
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -2
Query: 72 GRRRRIHQEHASNLEAQHPRILVP 1
G + + ++H+SN++ +H R+ P
Sbjct: 49 GESKEVAEDHSSNVQGRHDRVASP 72
>At1g11905.1 68414.m01373 expressed protein
Length = 228
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 170 GLDERINLQTQLTEFLVGSSQW 235
GLDE NL ++T F G S W
Sbjct: 138 GLDEVKNLMEEITSFGKGKSSW 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,141,208
Number of Sequences: 28952
Number of extensions: 126243
Number of successful extensions: 429
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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