Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00680
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 235 6e-63
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 235 6e-63
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 235 6e-63
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 2e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.29
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.2
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 28 1.2
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 28 1.5
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 27 3.6
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 26 4.7
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.7
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 6.2
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 25 8.2
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 235 bits (574), Expect = 6e-63
Identities = 109/168 (64%), Positives = 136/168 (80%), Gaps = 1/168 (0%)
Frame = +3
Query: 9 VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188
+RAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR
Sbjct: 5 IRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFR 63
Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365
+PY ++T E F+A E ++ VYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG
Sbjct: 64 NPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRG 123
Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGG
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGG 171
Score = 130 bits (314), Expect = 2e-31
Identities = 54/70 (77%), Positives = 64/70 (91%)
Frame = +2
Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAG 688
GRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G
Sbjct: 172 GRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPG 231
Query: 689 RKVGLIAARR 718
+KVGLIAARR
Sbjct: 232 QKVGLIAARR 241
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 235 bits (574), Expect = 6e-63
Identities = 109/168 (64%), Positives = 136/168 (80%), Gaps = 1/168 (0%)
Frame = +3
Query: 9 VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188
+RAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR
Sbjct: 5 IRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFR 63
Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365
+PY ++T E F+A E ++ VYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG
Sbjct: 64 NPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRG 123
Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGG
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGG 171
Score = 130 bits (314), Expect = 2e-31
Identities = 54/70 (77%), Positives = 64/70 (91%)
Frame = +2
Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAG 688
GRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G
Sbjct: 172 GRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPG 231
Query: 689 RKVGLIAARR 718
+KVGLIAARR
Sbjct: 232 QKVGLIAARR 241
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 235 bits (574), Expect = 6e-63
Identities = 109/168 (64%), Positives = 136/168 (80%), Gaps = 1/168 (0%)
Frame = +3
Query: 9 VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188
+RAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR
Sbjct: 5 IRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFR 63
Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365
+PY ++T E F+A E ++ VYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG
Sbjct: 64 NPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRG 123
Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGG
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGG 171
Score = 130 bits (314), Expect = 2e-31
Identities = 54/70 (77%), Positives = 64/70 (91%)
Frame = +2
Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAG 688
GRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G
Sbjct: 172 GRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPG 231
Query: 689 RKVGLIAARR 718
+KVGLIAARR
Sbjct: 232 QKVGLIAARR 241
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2
Query: 581 PYVRGVAMNPVEHPHGGGNHQHIG 652
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 505 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 335
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 515 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 607
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 135 DIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHRPIVYCG 266
+++ +PG+ PL + F+ K + I E L+ PIV CG
Sbjct: 13 ELVKEPGKVPPLDI-DFKRSVKSSQFSQCAITDEPLYPPIVSCG 55
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 635 YHHREDALQGSWQHHVHMASSYV*PCTCGMPFQLSK*VCQYVPSSNNTDHAS 480
YH + G W ++ + SS + C CG QL + + SS N DH++
Sbjct: 180 YHATSNEFPGLWCNNECIPSS-IPNCACGAKRQLEFQILPTLISSMNIDHSA 230
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 364 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TIG 248
P++P+F SR H P G+ T FP F+ IG
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFYGNLYIG 47
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 526 RFVNTSPPATIPTM-PLLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 386
RF+N + ++ PLLLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 4 HEYVLSVRVPVQFSFLTRRRGKALLNF--AL*ITLNVMDTSRELLRI*SM 147
H YVL + P F FL R++G + F + ++ + +TS+++++ S+
Sbjct: 333 HSYVLKILNPEWFDFL-RQQGVCVSRFESGIRVSFGLYNTSKDIIKFISV 381
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 6.2
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = -2
Query: 712 SSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLYRVHGNTTYIWPAVT-FDLVLVVCPSS 536
S+N T + S S+ S +T+ V H +TT P T + V P++
Sbjct: 41 SANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTT 100
Query: 535 FQNRFVNTSPPAT 497
N T+PP T
Sbjct: 101 SLNTTTTTAPPTT 113
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 194 IQVQDKEGALHCSRSSTQANCLLWKESN 277
I+V + A+H S +AN L+WK +N
Sbjct: 176 IRVLSRALAIHSDCSKGKANALIWKLAN 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,733
Number of Sequences: 5004
Number of extensions: 69939
Number of successful extensions: 207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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