Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00680
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      235   3e-62
08_02_0603 + 19208177-19210033,19210581-19210618,19210937-192110...    32   0.40 
03_03_0091 - 14371528-14372661                                         30   2.1  
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962...    29   2.8  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.8  
07_01_1201 - 11419851-11419913,11420090-11420311                       29   3.7  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   4.9  
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656...    29   4.9  
06_02_0282 + 13720419-13720985                                         28   8.6  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  235 bits (575), Expect = 3e-62
 Identities = 106/168 (63%), Positives = 135/168 (80%), Gaps = 1/168 (0%)
 Frame = +3

Query: 9   VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188
           +RAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR
Sbjct: 5   IRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFR 64

Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365
            P+++K +KELF+A E ++    VYCG++ATL +GNV+P+ ++PEG +VCN+E  +GDRG
Sbjct: 65  HPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRG 124

Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
             ARASG++A VI HNPD   +R+KLPSGAKK++PSS R M+G VAGG
Sbjct: 125 VFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGG 172



 Score =  132 bits (318), Expect = 4e-31
 Identities = 57/70 (81%), Positives = 62/70 (88%)
 Frame = +2

Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAG 688
           GR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G
Sbjct: 173 GRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG 232

Query: 689 RKVGLIAARR 718
           +KVGLIAARR
Sbjct: 233 QKVGLIAARR 242


>08_02_0603 +
           19208177-19210033,19210581-19210618,19210937-19211059,
           19211471-19211852
          Length = 799

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 497 CCWRGRIDKPILKAGRAYHKYKVKR--NCWPYVRGVAMN-PVEHPHGGGN 637
           CC+RG IDK  L   +  HKY +K   +C P   G+    PV   +G G+
Sbjct: 595 CCYRGNIDK-ALDLQQRMHKYGIKSTFSCVPLRNGMLQRLPVYFVYGDGS 643


>03_03_0091 - 14371528-14372661
          Length = 377

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = -2

Query: 508 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 335
           PPA  P      D      P G+  T      G+ P + A    A A    L+P+F   +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313

Query: 334 HTMVPSGIAPTGITFP 287
             M+ +G+AP  +  P
Sbjct: 314 RAMLTAGMAPPSLEPP 329


>06_03_0138 +
           17093196-17093325,17095704-17095804,17096224-17096292,
           17096403-17097650,17097763-17097871,17099459-17099655,
           17099732-17099842,17099927-17100079
          Length = 705

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +3

Query: 165 PLAVVHFRDPYKFKTRKELFIAPEALHRPIVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 344
           P    H + P   +    L I P+AL +PI Y G  A L     MP  A+P+     NL 
Sbjct: 224 PSGFPHLQQPPFLRPPHGLTI-PQALQQPIQYPGLNAPLPPFPRMPEFALPQPGSGNNLT 282

Query: 345 EKMG 356
           + +G
Sbjct: 283 QNLG 286


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 380 LWKLRHCDWT 409
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -2

Query: 508 PPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 335
           PP  +P +P     R+   P G        +G  P        A  R+P +P+F SR+
Sbjct: 16  PPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRV 72


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 411 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 322
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>01_01_0841 -
           6564029-6564348,6564654-6564686,6564793-6565450,
           6565530-6565694,6565789-6565878,6565982-6566182,
           6566525-6566737,6566835-6567077
          Length = 640

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 593 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 700
           G+A N    PHG  NHQH       ++ T++  K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558


>06_02_0282 + 13720419-13720985
          Length = 188

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 617 HPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARR 718
           +PHGGG H  +      +R    G +   +AARR
Sbjct: 47  NPHGGGGHAPLPPPQNPRRPNLVGAEEVAVAARR 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,665,013
Number of Sequences: 37544
Number of extensions: 504572
Number of successful extensions: 1464
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)