Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00680
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   258   2e-69
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    39   0.003
U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone...    31   0.83 
U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone...    31   0.83 
U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone...    31   0.83 
AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear recep...    31   0.83 
AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear recep...    31   0.83 
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   7.7  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  258 bits (633), Expect = 2e-69
 Identities = 113/169 (66%), Positives = 139/169 (82%), Gaps = 1/169 (0%)
 Frame = +3

Query: 6   RVRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHF 185
           R+R QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ F
Sbjct: 4   RIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAF 63

Query: 186 RDPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDR 362
           RDPYK+KT K   +A E +H    ++CG KA +++GN++PVG +PEGT +CN+E K GDR
Sbjct: 64  RDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDR 123

Query: 363 GRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
           G +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGG
Sbjct: 124 GVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGG 172



 Score =  132 bits (320), Expect = 2e-31
 Identities = 58/70 (82%), Positives = 62/70 (88%)
 Frame = +2

Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAG 688
           GR DKP+LKAGR+YHKYK KRN WP VRGVAMNPVEHPHGGGNHQHIG  STV+R  SAG
Sbjct: 173 GRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAG 232

Query: 689 RKVGLIAARR 718
           +KVGLIAARR
Sbjct: 233 KKVGLIAARR 242


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +3

Query: 288 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 464
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP   +  
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLPHKHEFS 217

Query: 465 LPSSNRGMVGIVAGGDVLTNLF*KLEGH 548
           L  +    VG ++  D+   +F   + H
Sbjct: 218 LHRTCMATVGRLSHADIDGKIFGSAQMH 245


>U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform b protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 497 CCWRGRIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 616
           CCW  ++  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 243 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 283


>U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform c protein.
          Length = 440

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 497 CCWRGRIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 616
           CCW  ++  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 283 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 323


>U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform d protein.
          Length = 446

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 497 CCWRGRIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 616
           CCW  ++  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 289 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 329


>AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-21b protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 497 CCWRGRIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 616
           CCW  ++  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 243 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 283


>AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear receptor
           NHR-21a protein.
          Length = 458

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 497 CCWRGRIDKP-ILKAGRAYHKYKVKRNCWPYVRGVAMNPVE 616
           CCW  ++  P +  A  AYH    ++  +P V+GV    VE
Sbjct: 301 CCWTAKVGCPGVCYANGAYHPSDKRQQAFPDVKGVTELSVE 341


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 108 HGYIKGVVKDIIHDPGRGAPLAVVHFR 188
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 108 HGYIKGVVKDIIHDPGRGAPLAVVHFR 188
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 402 IGHNPDAKRTRVKLPSGAKKVL 467
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 45  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 170
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,732,392
Number of Sequences: 27780
Number of extensions: 408323
Number of successful extensions: 1115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)