BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00680 (719 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 238 3e-63 At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 233 9e-62 At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 231 3e-61 At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 49 4e-06 At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 49 4e-06 At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 46 3e-05 At4g24390.2 68417.m03498 F-box family protein (FBX14) similar to... 31 1.0 At4g24390.1 68417.m03497 F-box family protein (FBX14) similar to... 31 1.0 At2g22730.1 68415.m02694 transporter-related low similarity to s... 30 1.3 At3g61210.1 68416.m06850 embryo-abundant protein-related similar... 29 2.3 At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 29 4.1 At2g38630.1 68415.m04745 expressed protein 29 4.1 At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote... 28 7.2 At1g11080.1 68414.m01269 serine carboxypeptidase S10 family prot... 28 7.2 At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 28 7.2 At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 9.5 At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 9.5 At1g68530.2 68414.m07829 very-long-chain fatty acid condensing e... 27 9.5 At1g68530.1 68414.m07828 very-long-chain fatty acid condensing e... 27 9.5 >At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) Length = 258 Score = 238 bits (582), Expect = 3e-63 Identities = 109/168 (64%), Positives = 136/168 (80%), Gaps = 1/168 (0%) Frame = +3 Query: 9 VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188 +RAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR Sbjct: 5 IRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFR 64 Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365 P++FK +KELF+A E ++ +YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG Sbjct: 65 HPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRG 124 Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509 LARASG++A VI HNPD+ TR+KLPSG+KK++PS R M+G VAGG Sbjct: 125 VLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGG 172 Score = 128 bits (308), Expect = 5e-30 Identities = 56/70 (80%), Positives = 61/70 (87%) Frame = +2 Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAG 688 GR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG ASTV+R G Sbjct: 173 GRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG 232 Query: 689 RKVGLIAARR 718 +KVGLIAARR Sbjct: 233 QKVGLIAARR 242 >At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal protein L8, cytosolic, tomato, PIR1:R5TOL8 Length = 258 Score = 233 bits (570), Expect = 9e-62 Identities = 106/168 (63%), Positives = 134/168 (79%), Gaps = 1/168 (0%) Frame = +3 Query: 9 VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188 +RAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR Sbjct: 5 IRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFR 64 Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365 P++FK +KELF+A E ++ +YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG Sbjct: 65 HPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRG 124 Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509 ARASG++A VI HNPD +R+KLPSG+KK++PS R M+G VAGG Sbjct: 125 VFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGG 172 Score = 132 bits (319), Expect = 2e-31 Identities = 57/70 (81%), Positives = 62/70 (88%) Frame = +2 Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAG 688 GR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R G Sbjct: 173 GRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG 232 Query: 689 RKVGLIAARR 718 +KVGLIAARR Sbjct: 233 KKVGLIAARR 242 >At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582 Length = 260 Score = 231 bits (565), Expect = 3e-61 Identities = 107/169 (63%), Positives = 136/169 (80%), Gaps = 2/169 (1%) Frame = +3 Query: 9 VRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHF 185 +RAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA V F Sbjct: 5 IRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAF 64 Query: 186 RDPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDR 362 R P+++ +KELF+A E ++ +YCGKKA L VGNV+P+G++PEG ++CN+E +GDR Sbjct: 65 RHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDR 124 Query: 363 GRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509 G LARASG++A VI HNP++ TRVKLPSG+KK+LPS+ R M+G VAGG Sbjct: 125 GALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGG 173 Score = 132 bits (318), Expect = 3e-31 Identities = 58/70 (82%), Positives = 60/70 (85%) Frame = +2 Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAG 688 GR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R SAG Sbjct: 174 GRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAG 233 Query: 689 RKVGLIAARR 718 KVG IAARR Sbjct: 234 AKVGQIAARR 243 >At2g44065.2 68415.m05480 ribosomal protein L2 family protein similar to ribosomal protein L2 [Gossypium arboreum] GI:17644114; contains Pfam profile PF03947: Ribosomal Proteins L2, C-terminal domain Length = 214 Score = 48.8 bits (111), Expect = 4e-06 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = +3 Query: 285 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 464 +G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117 Query: 465 LPSSNRGMVGIVA 503 + + R +G V+ Sbjct: 118 INAKCRATIGTVS 130 Score = 40.7 bits (91), Expect = 0.001 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%) Frame = +2 Query: 557 YKVKRNCW----PYVRGVAMNPVEHPHGGG 634 YK ++ W P VRGVAMNP +HPHGGG Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169 >At2g44065.1 68415.m05479 ribosomal protein L2 family protein similar to ribosomal protein L2 [Gossypium arboreum] GI:17644114; contains Pfam profile PF03947: Ribosomal Proteins L2, C-terminal domain Length = 214 Score = 48.8 bits (111), Expect = 4e-06 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = +3 Query: 285 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 464 +G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117 Query: 465 LPSSNRGMVGIVA 503 + + R +G V+ Sbjct: 118 INAKCRATIGTVS 130 Score = 40.7 bits (91), Expect = 0.001 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%) Frame = +2 Query: 557 YKVKRNCW----PYVRGVAMNPVEHPHGGG 634 YK ++ W P VRGVAMNP +HPHGGG Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169 >At4g14250.1 68417.m02198 UBX domain-containing protein low similarity to 60S ribosomal protein L2 [Nicotiana tabacum] GI:9230281; contains Pfam profile PF00789: UBX domain Length = 724 Score = 45.6 bits (103), Expect = 3e-05 Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%) Frame = +2 Query: 554 KYKVKRNCWPYVRGVAM-NPVEHPHGG 631 K +KRN W VRGVAM NPVEHPHGG Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437 >At4g24390.2 68417.m03498 F-box family protein (FBX14) similar to transport inhibitor response 1 protein GI:8777429 from [Arabidopsis thaliana] Length = 623 Score = 30.7 bits (66), Expect = 1.0 Identities = 19/76 (25%), Positives = 35/76 (46%) Frame = +3 Query: 96 YAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHRPIVYCGKKA 275 + E +++ + D + P L + R P+ K R F++ E LHR +V + Sbjct: 224 FPEGETHLESLSFDCVESPINFKALEELVVRSPFLKKLRTNRFVSLEELHRLMVRAPQLT 283 Query: 276 TLEVGNVMPVGAMPEG 323 +L G+ P +P+G Sbjct: 284 SLGTGSFSP-DNVPQG 298 >At4g24390.1 68417.m03497 F-box family protein (FBX14) similar to transport inhibitor response 1 protein GI:8777429 from [Arabidopsis thaliana] Length = 623 Score = 30.7 bits (66), Expect = 1.0 Identities = 19/76 (25%), Positives = 35/76 (46%) Frame = +3 Query: 96 YAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHRPIVYCGKKA 275 + E +++ + D + P L + R P+ K R F++ E LHR +V + Sbjct: 224 FPEGETHLESLSFDCVESPINFKALEELVVRSPFLKKLRTNRFVSLEELHRLMVRAPQLT 283 Query: 276 TLEVGNVMPVGAMPEG 323 +L G+ P +P+G Sbjct: 284 SLGTGSFSP-DNVPQG 298 >At2g22730.1 68415.m02694 transporter-related low similarity to spinster membrane proteins from [Drosophila melanogaster] GI:12003974, GI:12003976, GI:12003972, GI:12003970; contains Pfam profile PF00083: major facilitator superfamily protein Length = 510 Score = 30.3 bits (65), Expect = 1.3 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 2/103 (1%) Frame = -2 Query: 568 FDLVLVVCP--SSFQNRFVNTSPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITV 395 F V ++C + F+ ATIP LL G TFL FT L S I + Sbjct: 337 FGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIAL 396 Query: 394 AKFPEARARRPLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 266 E +P+ LH + PS + P + T + F Sbjct: 397 FALGELLVFATQAPVNYVCLHCVKPS-LRPLSMAISTVAIHIF 438 >At3g61210.1 68416.m06850 embryo-abundant protein-related similar to embryo-abundant protein [Picea glauca] GI:1350531 Length = 261 Score = 29.5 bits (63), Expect = 2.3 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = -2 Query: 625 VRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSPPATIPTMPLLLDG 467 V+ + R G +W V DL++ S R V+++ P PTM L DG Sbjct: 125 VKRVLRKQGGIIVVW--VYNDLIITPKVDSIMKRLVDSTLPYRNPTMNLAFDG 175 >At5g52600.1 68418.m06531 myb family transcription factor (MYB82) contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA putative transcription factor (MYB82) mRNA, partial cds GI:3941515 Length = 201 Score = 28.7 bits (61), Expect = 4.1 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = +2 Query: 530 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 691 ++ R K VKR W + + HG GN I + S +KRG + R Sbjct: 1 MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54 >At2g38630.1 68415.m04745 expressed protein Length = 467 Score = 28.7 bits (61), Expect = 4.1 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Frame = -1 Query: 290 SNFKSCFLSTINNWPV*S--FGSNEELLPCLELVWIAEVYNSQRCTSTRVMDYILNNSLD 117 +N K CFL+ + + S + N + L + V+ ++ Y+S +C STR+ +YIL D Sbjct: 117 TNKKVCFLNVSPDEVIRSLFYNKNNDSLITVS-VYASDNYSSLKCRSTRI-EYILRGQAD 174 >At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein kinase, putative brassinosteroid-insensitive protein BRI1 - Arabidopsis thaliana, PIR:T09356 Length = 836 Score = 27.9 bits (59), Expect = 7.2 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = +3 Query: 174 VVHFRDPYKFKTRKELFIAPEALHRPIVYCGKKATLEVGNVMPVGAMPEGT 326 +VHF P+ F L E + + KATLE GN + V + E T Sbjct: 521 LVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKT 571 >At1g11080.1 68414.m01269 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)] Length = 492 Score = 27.9 bits (59), Expect = 7.2 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -1 Query: 314 HSSNRHHISNFKSCFLSTINNWPV*SFGSNEELLPCLE 201 H+S+ ++ N+ C + NNW GSN +LP E Sbjct: 363 HASDGVNLKNWSICNMEIFNNWT----GSNPSVLPIYE 396 >At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit family protein contains Pfam profile: PF00928 adaptor complexes medium subunit family Length = 428 Score = 27.9 bits (59), Expect = 7.2 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 6/110 (5%) Frame = -2 Query: 463 TFLAPDGSFTLV--RLASGLCP-ITVAKFPEARARRPLSPIFSSRLHTMVPSGIAPTGIT 293 +F+ PDGSF L+ RL++ + P I V E +R + + +R S I Sbjct: 257 SFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIE 316 Query: 292 FPTSRVAFFPQ*TIGLCRASGAMKSSFLVLNL---YGSRKCTTAKGAPLP 152 P A+ P L A+ A + LV + YG+++ T LP Sbjct: 317 LPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLP 366 >At4g33410.1 68417.m04748 signal peptide peptidase family protein contains Pfam domain PF04258: Membrane protein of unknown function (DUF435) Length = 372 Score = 27.5 bits (58), Expect = 9.5 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -3 Query: 558 YLWYALPAFKIGL 520 Y+WYALP + IGL Sbjct: 301 YIWYALPGYAIGL 313 >At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical to plastidic lipoamide dehydrogenase from Arabidopsis thaliana [gi:7159282] Length = 570 Score = 27.5 bits (58), Expect = 9.5 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = -1 Query: 395 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 282 G+V GTC +A +G +R N HH+ +F Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154 >At1g68530.2 68414.m07829 very-long-chain fatty acid condensing enzyme (CUT1) identical to very-long-chain fatty acid condensing enzyme (CUT1) GB:AF129511 (required for cuticular wax biosynthesis and pollen fertility: Millar,A.A., et al., Plant Cell (1999)) Length = 377 Score = 27.5 bits (58), Expect = 9.5 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = -2 Query: 643 LMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSPPATIPTMPLLLDGR 464 +M V +L +W ++ FDLV V+C SSF F++T + P L+D Sbjct: 37 IMAIVAVELLRMGPEEILNVWNSLQFDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYS 95 Query: 463 TFLAP 449 + P Sbjct: 96 CYKPP 100 >At1g68530.1 68414.m07828 very-long-chain fatty acid condensing enzyme (CUT1) identical to very-long-chain fatty acid condensing enzyme (CUT1) GB:AF129511 (required for cuticular wax biosynthesis and pollen fertility: Millar,A.A., et al., Plant Cell (1999)) Length = 497 Score = 27.5 bits (58), Expect = 9.5 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = -2 Query: 643 LMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSPPATIPTMPLLLDGR 464 +M V +L +W ++ FDLV V+C SSF F++T + P L+D Sbjct: 37 IMAIVAVELLRMGPEEILNVWNSLQFDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYS 95 Query: 463 TFLAP 449 + P Sbjct: 96 CYKPP 100 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,890,964 Number of Sequences: 28952 Number of extensions: 384259 Number of successful extensions: 1070 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1034 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1064 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1565336320 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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