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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00680
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             238   3e-63
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   233   9e-62
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   231   3e-61
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    49   4e-06
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    49   4e-06
At4g14250.1 68417.m02198 UBX domain-containing protein low simil...    46   3e-05
At4g24390.2 68417.m03498 F-box family protein (FBX14) similar to...    31   1.0  
At4g24390.1 68417.m03497 F-box family protein (FBX14) similar to...    31   1.0  
At2g22730.1 68415.m02694 transporter-related low similarity to s...    30   1.3  
At3g61210.1 68416.m06850 embryo-abundant protein-related similar...    29   2.3  
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)...    29   4.1  
At2g38630.1 68415.m04745 expressed protein                             29   4.1  
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    28   7.2  
At1g11080.1 68414.m01269 serine carboxypeptidase S10 family prot...    28   7.2  
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun...    28   7.2  
At4g33410.1 68417.m04748 signal peptide peptidase family protein...    27   9.5  
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    27   9.5  
At1g68530.2 68414.m07829 very-long-chain fatty acid condensing e...    27   9.5  
At1g68530.1 68414.m07828 very-long-chain fatty acid condensing e...    27   9.5  

>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  238 bits (582), Expect = 3e-63
 Identities = 109/168 (64%), Positives = 136/168 (80%), Gaps = 1/168 (0%)
 Frame = +3

Query: 9   VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188
           +RAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR
Sbjct: 5   IRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFR 64

Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365
            P++FK +KELF+A E ++    +YCGKKATL VGNV+P+ ++PEG +VCN+E  +GDRG
Sbjct: 65  HPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRG 124

Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
            LARASG++A VI HNPD+  TR+KLPSG+KK++PS  R M+G VAGG
Sbjct: 125 VLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGG 172



 Score =  128 bits (308), Expect = 5e-30
 Identities = 56/70 (80%), Positives = 61/70 (87%)
 Frame = +2

Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAG 688
           GR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G
Sbjct: 173 GRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG 232

Query: 689 RKVGLIAARR 718
           +KVGLIAARR
Sbjct: 233 QKVGLIAARR 242


>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  233 bits (570), Expect = 9e-62
 Identities = 106/168 (63%), Positives = 134/168 (79%), Gaps = 1/168 (0%)
 Frame = +3

Query: 9   VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188
           +RAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR
Sbjct: 5   IRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFR 64

Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365
            P++FK +KELF+A E ++    +YCGKKATL VGNV+P+ ++PEG ++CN+E  +GDRG
Sbjct: 65  HPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRG 124

Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
             ARASG++A VI HNPD   +R+KLPSG+KK++PS  R M+G VAGG
Sbjct: 125 VFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGG 172



 Score =  132 bits (319), Expect = 2e-31
 Identities = 57/70 (81%), Positives = 62/70 (88%)
 Frame = +2

Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAG 688
           GR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G
Sbjct: 173 GRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG 232

Query: 689 RKVGLIAARR 718
           +KVGLIAARR
Sbjct: 233 KKVGLIAARR 242


>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  231 bits (565), Expect = 3e-61
 Identities = 107/169 (63%), Positives = 136/169 (80%), Gaps = 2/169 (1%)
 Frame = +3

Query: 9   VRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHF 185
           +RAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA V F
Sbjct: 5   IRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAF 64

Query: 186 RDPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDR 362
           R P+++  +KELF+A E ++    +YCGKKA L VGNV+P+G++PEG ++CN+E  +GDR
Sbjct: 65  RHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDR 124

Query: 363 GRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
           G LARASG++A VI HNP++  TRVKLPSG+KK+LPS+ R M+G VAGG
Sbjct: 125 GALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGG 173



 Score =  132 bits (318), Expect = 3e-31
 Identities = 58/70 (82%), Positives = 60/70 (85%)
 Frame = +2

Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAG 688
           GR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R  SAG
Sbjct: 174 GRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAG 233

Query: 689 RKVGLIAARR 718
            KVG IAARR
Sbjct: 234 AKVGQIAARR 243


>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 285 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 464
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 465 LPSSNRGMVGIVA 503
           + +  R  +G V+
Sbjct: 118 INAKCRATIGTVS 130



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
 Frame = +2

Query: 557 YKVKRNCW----PYVRGVAMNPVEHPHGGG 634
           YK  ++ W    P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 285 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 464
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 465 LPSSNRGMVGIVA 503
           + +  R  +G V+
Sbjct: 118 INAKCRATIGTVS 130



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
 Frame = +2

Query: 557 YKVKRNCW----PYVRGVAMNPVEHPHGGG 634
           YK  ++ W    P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169


>At4g14250.1 68417.m02198 UBX domain-containing protein low
           similarity to 60S ribosomal protein L2 [Nicotiana
           tabacum] GI:9230281; contains Pfam profile PF00789: UBX
           domain
          Length = 724

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +2

Query: 554 KYKVKRNCWPYVRGVAM-NPVEHPHGG 631
           K  +KRN W  VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437


>At4g24390.2 68417.m03498 F-box family protein (FBX14) similar to
           transport inhibitor response 1 protein GI:8777429 from
           [Arabidopsis thaliana]
          Length = 623

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +3

Query: 96  YAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHRPIVYCGKKA 275
           + E   +++ +  D +  P     L  +  R P+  K R   F++ E LHR +V   +  
Sbjct: 224 FPEGETHLESLSFDCVESPINFKALEELVVRSPFLKKLRTNRFVSLEELHRLMVRAPQLT 283

Query: 276 TLEVGNVMPVGAMPEG 323
           +L  G+  P   +P+G
Sbjct: 284 SLGTGSFSP-DNVPQG 298


>At4g24390.1 68417.m03497 F-box family protein (FBX14) similar to
           transport inhibitor response 1 protein GI:8777429 from
           [Arabidopsis thaliana]
          Length = 623

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +3

Query: 96  YAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHRPIVYCGKKA 275
           + E   +++ +  D +  P     L  +  R P+  K R   F++ E LHR +V   +  
Sbjct: 224 FPEGETHLESLSFDCVESPINFKALEELVVRSPFLKKLRTNRFVSLEELHRLMVRAPQLT 283

Query: 276 TLEVGNVMPVGAMPEG 323
           +L  G+  P   +P+G
Sbjct: 284 SLGTGSFSP-DNVPQG 298


>At2g22730.1 68415.m02694 transporter-related low similarity to
           spinster membrane proteins from [Drosophila
           melanogaster] GI:12003974, GI:12003976, GI:12003972,
           GI:12003970; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 510

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
 Frame = -2

Query: 568 FDLVLVVCP--SSFQNRFVNTSPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITV 395
           F  V ++C    +    F+     ATIP    LL G TFL     FT   L S    I +
Sbjct: 337 FGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIAL 396

Query: 394 AKFPEARARRPLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 266
               E       +P+    LH + PS + P  +   T  +  F
Sbjct: 397 FALGELLVFATQAPVNYVCLHCVKPS-LRPLSMAISTVAIHIF 438


>At3g61210.1 68416.m06850 embryo-abundant protein-related similar to
           embryo-abundant protein [Picea glauca] GI:1350531
          Length = 261

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 625 VRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSPPATIPTMPLLLDG 467
           V+ + R  G    +W  V  DL++     S   R V+++ P   PTM L  DG
Sbjct: 125 VKRVLRKQGGIIVVW--VYNDLIITPKVDSIMKRLVDSTLPYRNPTMNLAFDG 175


>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to  cDNA putative transcription factor
           (MYB82) mRNA, partial cds GI:3941515
          Length = 201

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 530 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 691
           ++  R   K  VKR  W     + +      HG GN   I + S +KRG  + R
Sbjct: 1   MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54


>At2g38630.1 68415.m04745 expressed protein 
          Length = 467

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -1

Query: 290 SNFKSCFLSTINNWPV*S--FGSNEELLPCLELVWIAEVYNSQRCTSTRVMDYILNNSLD 117
           +N K CFL+   +  + S  +  N + L  +  V+ ++ Y+S +C STR+ +YIL    D
Sbjct: 117 TNKKVCFLNVSPDEVIRSLFYNKNNDSLITVS-VYASDNYSSLKCRSTRI-EYILRGQAD 174


>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 174 VVHFRDPYKFKTRKELFIAPEALHRPIVYCGKKATLEVGNVMPVGAMPEGT 326
           +VHF  P+ F     L    E + +       KATLE GN + V  + E T
Sbjct: 521 LVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKT 571


>At1g11080.1 68414.m01269 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]
          Length = 492

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 314 HSSNRHHISNFKSCFLSTINNWPV*SFGSNEELLPCLE 201
           H+S+  ++ N+  C +   NNW     GSN  +LP  E
Sbjct: 363 HASDGVNLKNWSICNMEIFNNWT----GSNPSVLPIYE 396


>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
 Frame = -2

Query: 463 TFLAPDGSFTLV--RLASGLCP-ITVAKFPEARARRPLSPIFSSRLHTMVPSGIAPTGIT 293
           +F+ PDGSF L+  RL++ + P I V    E  +R  +  +  +R      S      I 
Sbjct: 257 SFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIE 316

Query: 292 FPTSRVAFFPQ*TIGLCRASGAMKSSFLVLNL---YGSRKCTTAKGAPLP 152
            P    A+ P     L  A+ A +   LV  +   YG+++ T      LP
Sbjct: 317 LPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLP 366


>At4g33410.1 68417.m04748 signal peptide peptidase family protein
           contains Pfam domain PF04258: Membrane protein of
           unknown function (DUF435)
          Length = 372

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 558 YLWYALPAFKIGL 520
           Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 395 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 282
           G+V  GTC           +A +G +R   N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154


>At1g68530.2 68414.m07829 very-long-chain fatty acid condensing
           enzyme (CUT1) identical to very-long-chain fatty acid
           condensing enzyme (CUT1) GB:AF129511 (required for
           cuticular wax biosynthesis and pollen fertility:
           Millar,A.A., et al., Plant Cell (1999))
          Length = 377

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -2

Query: 643 LMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSPPATIPTMPLLLDGR 464
           +M    V +L         +W ++ FDLV V+C SSF   F++T    + P    L+D  
Sbjct: 37  IMAIVAVELLRMGPEEILNVWNSLQFDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYS 95

Query: 463 TFLAP 449
            +  P
Sbjct: 96  CYKPP 100


>At1g68530.1 68414.m07828 very-long-chain fatty acid condensing
           enzyme (CUT1) identical to very-long-chain fatty acid
           condensing enzyme (CUT1) GB:AF129511 (required for
           cuticular wax biosynthesis and pollen fertility:
           Millar,A.A., et al., Plant Cell (1999))
          Length = 497

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -2

Query: 643 LMVTTTVRMLYRVHGNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSPPATIPTMPLLLDGR 464
           +M    V +L         +W ++ FDLV V+C SSF   F++T    + P    L+D  
Sbjct: 37  IMAIVAVELLRMGPEEILNVWNSLQFDLVQVLC-SSFFVIFISTVYFMSKPRTIYLVDYS 95

Query: 463 TFLAP 449
            +  P
Sbjct: 96  CYKPP 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,964
Number of Sequences: 28952
Number of extensions: 384259
Number of successful extensions: 1070
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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