Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00679
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   132   2e-31
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   132   2e-31
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   132   3e-31
At5g47870.1 68418.m05914 expressed protein                             31   0.76 
At5g48310.1 68418.m05968 expressed protein                             31   1.0  
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ...    28   5.3  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  132 bits (319), Expect = 2e-31
 Identities = 59/80 (73%), Positives = 66/80 (82%)
 Frame = +3

Query: 30  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 210 SSEALEAGRICCNKYS*RTA 269
           SSEALEA RI CNKY  ++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  132 bits (318), Expect = 3e-31
 Identities = 61/85 (71%), Positives = 69/85 (81%)
 Frame = +2

Query: 254 LVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
           +VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ +
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 434 MSVRSSDRWKAQVIEALRRAKFKFP 508
           +SVR  D       EALRRAKFKFP
Sbjct: 136 LSVRCKDNHGVHAQEALRRAKFKFP 160



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/47 (53%), Positives = 31/47 (65%)
 Frame = +1

Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 645
           P RQKI VS+KWGFTK+ R E+ KLR   R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  132 bits (319), Expect = 2e-31
 Identities = 59/80 (73%), Positives = 66/80 (82%)
 Frame = +3

Query: 30  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 210 SSEALEAGRICCNKYS*RTA 269
           SSEALEA RI CNKY  ++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  130 bits (315), Expect = 7e-31
 Identities = 61/85 (71%), Positives = 69/85 (81%)
 Frame = +2

Query: 254 LVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
           +VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ +
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 434 MSVRSSDRWKAQVIEALRRAKFKFP 508
           +SVR  D       EALRRAKFKFP
Sbjct: 136 LSVRCKDAHGHHAQEALRRAKFKFP 160



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/47 (55%), Positives = 33/47 (70%)
 Frame = +1

Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 645
           P RQKI VS+KWGFTK+ R +F KLR+E R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  132 bits (318), Expect = 3e-31
 Identities = 59/80 (73%), Positives = 66/80 (82%)
 Frame = +3

Query: 30  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 210 SSEALEAGRICCNKYS*RTA 269
           SSEALEA RI CNKY  ++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  130 bits (315), Expect = 7e-31
 Identities = 61/85 (71%), Positives = 69/85 (81%)
 Frame = +2

Query: 254 LVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
           +VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ +
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 434 MSVRSSDRWKAQVIEALRRAKFKFP 508
           +SVR  D       EALRRAKFKFP
Sbjct: 136 LSVRCKDAHGHHAQEALRRAKFKFP 160



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/47 (53%), Positives = 33/47 (70%)
 Frame = +1

Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 645
           P RQKI VS+KWGFTK+ R ++ KLR+E R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206


>At5g47870.1 68418.m05914 expressed protein
          Length = 199

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +2

Query: 290 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 469
           R++L PF  + +N+ + C+G      G+ G     +  V       PI    SS      
Sbjct: 23  RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77

Query: 470 VIEALRRAKFKFPD 511
           +IE LR    K PD
Sbjct: 78  LIEILRDLNKKIPD 91


>At5g48310.1 68418.m05968 expressed protein
          Length = 1156

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 206 LFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIR-FIFAVPVASCWPAPH 30
           LF+ + +++ A  K+ N   L + I+  +L      T+   R+R F+ AVP  SC P PH
Sbjct: 736 LFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVP-PSC-PLPH 793


>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
           domain, PF00082: Subtilase family; contains Pfam domain,
           PF02225: protease associated (PA) domain
          Length = 754

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 505 PRRQKIYVSKKWGFTKYERDEFEKLREEG 591
           PR+ KI+ ++ W F   + +E E  R +G
Sbjct: 67  PRKYKIHTTRSWEFVGLKEEEGEDYRSDG 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,169,345
Number of Sequences: 28952
Number of extensions: 386645
Number of successful extensions: 1197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)