Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00678
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1206 + 31727931-31728048,31728492-31728538,31728782-317289...    36   0.045
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755...    28   9.1  

>04_04_1206 +
           31727931-31728048,31728492-31728538,31728782-31728906,
           31729067-31729133,31729221-31729283,31729429-31729498,
           31729751-31729770,31729840-31729956,31730046-31730227,
           31730586-31730640,31731604-31731697,31731791-31731900,
           31733167-31733193,31733510-31733701
          Length = 428

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 52  ISRGHALITGPRVHRCERLWMWL 120
           I+RGH +    R+ RC RLW WL
Sbjct: 252 ITRGHVVTESDRIRRCSRLWRWL 274


>03_05_0728 -
           27174157-27174408,27175316-27175364,27175454-27175536,
           27175673-27175753,27175838-27175894,27176103-27176202,
           27176280-27176350,27176427-27176567,27176657-27176863,
           27177442-27177612,27177735-27177815,27177887-27177940,
           27178040-27178154,27178302-27178441,27178976-27179197,
           27179278-27179376,27179461-27179580,27179776-27179981,
           27180072-27180249,27180426-27180486,27180587-27180696,
           27180765-27180896,27181124-27181165,27181592-27181762,
           27181806-27181808,27181848-27181974,27182130-27182164,
           27182982-27183083,27183167-27183224,27183314-27183415,
           27183513-27183659,27183744-27183880,27183973-27184122,
           27184234-27184393,27184930-27185075,27185162-27185305,
           27185535-27185663,27186376-27186420,27187103-27187192,
           27187473-27187475
          Length = 1506

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 653 GALRTSITSCIRRETNLKKDREYDIRHNARLIYL 552
           G L   +  C+RRE +  K ++   RH AR+ YL
Sbjct: 758 GTLARKLYECMRREASAVKIQKNVRRHKARVSYL 791


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,972,162
Number of Sequences: 37544
Number of extensions: 278448
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)