Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00677
         (728 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M32659-1|AAA28896.1|  924|Drosophila melanogaster protein ( D.me...    29   8.6  

>M32659-1|AAA28896.1|  924|Drosophila melanogaster protein (
           D.melanogaster Shab11protein mRNA, complete cds. ).
          Length = 924

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 239 VTSATLTQFSVVKILLSSSCELKWLFFSG*TSVLDL 346
           V +  +T F++  IL  SS   KW FF G  +++DL
Sbjct: 477 VEAVCITWFTLEYILRFSSSPDKWKFFKGGLNIIDL 512


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,179,803
Number of Sequences: 53049
Number of extensions: 636647
Number of successful extensions: 1299
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)