Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00677
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81499-1|CAB04087.1|  471|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical...    29   4.5  
AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical...    29   4.5  

>Z81499-1|CAB04087.1|  471|Caenorhabditis elegans Hypothetical
           protein F11C3.1 protein.
          Length = 471

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 649 RLSWGCESKHRKGCIVLLTRSADFVHFSSRVVHRNL 542
           RLS+  +SKH KGCIV L    + +   +R++  +L
Sbjct: 329 RLSFSVDSKHEKGCIVALDEPFEGLQKGTRLLFEDL 364


>AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical
           protein D1007.5b protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 322 WLD-ECARSQLVFSCYRSLLESLVFFLEIL*LFYTMYRFPTIHCHTQILFWATN 480
           W D +  + +L F C   L   L  FL+ L ++ T++  P  + H  + F   N
Sbjct: 35  WPDIQFTQGELFFECTLFLYSVLALFLQYLNIYKTLWWLPKSYWHYSLKFHLIN 88


>AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical
           protein D1007.5a protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 322 WLD-ECARSQLVFSCYRSLLESLVFFLEIL*LFYTMYRFPTIHCHTQILFWATN 480
           W D +  + +L F C   L   L  FL+ L ++ T++  P  + H  + F   N
Sbjct: 35  WPDIQFTQGELFFECTLFLYSVLALFLQYLNIYKTLWWLPKSYWHYSLKFHLIN 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,731,636
Number of Sequences: 27780
Number of extensions: 360295
Number of successful extensions: 744
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)