Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00677
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72090.1 68414.m08333 radical SAM domain-containing protein /...    31   0.59 
At5g16830.1 68418.m01972 syntaxin 21 (SYP21) / PEP12 homolog ide...    29   4.2  
At5g53390.1 68418.m06634 expressed protein                             28   7.3  
At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containi...    27   9.6  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.6  

>At1g72090.1 68414.m08333 radical SAM domain-containing protein /
           TRAM domain-containing protein contains Pfam profiles
           PF00919: UPF0004 family protein, PF04055: radical SAM
           domain protein, PF01938: TRAM domain
          Length = 601

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 586 QIALIIRYSLFYVLIHSPTTSGASSSQTTLNR 681
           +IA ++R+   Y  +H P  SG+ S  T +NR
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNR 330


>At5g16830.1 68418.m01972 syntaxin 21 (SYP21) / PEP12 homolog
           identical to Syntaxin homolog (PEP12 homolog)
           (SP:Q39233) and syntaxin of plants 21 (GP:899122)
           {Arabidopsis thaliana}; contains Pfam profiles
           PF05739:SNARE domain and PF00804:  Syntaxin
          Length = 279

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 306 LSSQLDDSKILTTEN*VNV--AEVTSLSNSVINCLLLTYF 193
           +SS LD+S   TT+  V +  A  T  SNS + CLL+  F
Sbjct: 227 ISSNLDNSHAATTQATVQLRKAAKTQRSNSSLTCLLILIF 266


>At5g53390.1 68418.m06634 expressed protein
          Length = 486

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 291 QVVNSNGYFFLARRVC*ISTGIQLLSEPIGIISFFFGNPITILYNVSISNHPLSYTNP-V 467
           + V S  +F L  +V  +   + L+ + I   +  F N +     ++   HPL+Y +P V
Sbjct: 367 EAVFSMAFFKLILKVLGLKASVVLVRKVIHSTTLSFSNVVGPKEEITFHGHPLNYISPCV 426

Query: 468 LGY 476
            G+
Sbjct: 427 FGH 429


>At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 823

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 714 RPDCRT*ISIRSIKSCLGTRRAACRGAVNQNIEK 613
           +PDC T IS+ SI S LG  R ACR      + K
Sbjct: 345 QPDCLTLISLASILSQLGDIR-ACRSVQGFTLRK 377


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 322 WLDECARSQLVFSCYRSLLESL 387
           WLD+ ARS +V+  + S+LE+L
Sbjct: 262 WLDKQARSSVVYISFGSMLETL 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,122
Number of Sequences: 28952
Number of extensions: 314992
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)