Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00676
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    33   0.003
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   3.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   4.3  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   5.6  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   5.6  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   7.4  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   9.8  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +2

Query: 452 SSPAKEFELFANSPKPSETLLPKKIYLPENPLYQLNHHCSLNQLFLRNHYYVQIHLSI*N 631
           SSP   +++ A  P PS++  P +IY P   L  L +    NQ     HY    ++S+ N
Sbjct: 328 SSPPPPYQISAQ-PTPSQS--PNQIYQPVTNLTNLTYPSYYNQDVSCTHYQNPEYISVVN 384

Query: 632 PHS 640
           P S
Sbjct: 385 PES 387


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 287 GKYLGVLQCEYCNNVF 240
           GK+ GV  CE C   F
Sbjct: 95  GKHYGVYSCEGCKGFF 110



 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 184 RLTQWLKLKPLHLNQPMTKKTLL 252
           +L QW KL P   + P+T +  L
Sbjct: 224 QLVQWAKLVPHFTSLPLTDQVQL 246


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 650 DSAWNGDSIWRGESERNSDSLERAGSVSNG 561
           D+  N  S  +GE+ RNS +    G V +G
Sbjct: 395 DNRNNTSSRAQGETSRNSKNSGNGGGVQDG 424


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 593 NHYYVQIHLSI*NPHSMLNLHCLLSVLCQMSMMY 694
           NH  VQ  ++   P  +    C+ + L QMSM+Y
Sbjct: 316 NHAIVQSLVNSMKPKEVPGPCCVPTQLGQMSMLY 349


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 650 DSAWNGDSIWRGESERNSDSLERAGSVS 567
           D+AW G ++   +       +ERA SV+
Sbjct: 320 DAAWGGGALVSAKHRHLLKGIERADSVT 347


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 212 HYT*TNL*QRKRCCNIHTEEPQDIFPE 292
           H   TN    ++   +HT EP D+ PE
Sbjct: 201 HKKFTNALVLQQHIRLHTGEPTDLTPE 227


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 348 VNSCPYNLISGGIVCLDEIS 289
           +N C  N    G  C+D+I+
Sbjct: 69  INDCKVNPCENGGTCVDKIN 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,593
Number of Sequences: 336
Number of extensions: 3090
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)