Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00676
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    29   0.65 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   2.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.5  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   3.5  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   6.1  

>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 216 TPEPTYDKENVVAIFTLKNPKIFS 287
           TPE  + K NV +I T KNP +FS
Sbjct: 116 TPEFKHRKRNVESILTPKNPSLFS 139


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 569 SNGDSVGRGDSRADKFSLGVKFHSA 495
           SNG  V R  +R  KF  G +FH A
Sbjct: 103 SNGSKVLRDSTRTKKFKFGKEFHCA 127


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 129 NPNPEETSETKSVEDFNVAANAMVETEAITPEP 227
           NP+PE+T   +SVE   V +N  + + +  P P
Sbjct: 216 NPSPEDTVAFQSVELQKVISNNRLNSSSTPPTP 248


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 411 PKTKISTSFKTTGFLLRQKNSNYLLTLLSRV 503
           P T I   F T G LLR+ +S++LLT  S V
Sbjct: 491 PDTAIK--FMTDGILLRELSSDFLLTAYSAV 519


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 364 RFACSFTSASCITSSDPKPKFRRASKQQDFFSGKRIRI 477
           RF C FTS SC        K+ R   +  F   +R  I
Sbjct: 534 RFPCIFTSFSCYNCISGTRKYSRQYSRDKFHYNQRTTI 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,840
Number of Sequences: 5004
Number of extensions: 51087
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)