Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00676
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 33 0.29
04_01_0353 - 4623910-4624812 33 0.29
06_03_0496 - 21415596-21416068,21416618-21417224 32 0.39
09_04_0179 - 15366119-15366916 32 0.51
08_02_0826 - 21583507-21583555,21584000-21584679 31 0.90
10_08_0230 + 16023569-16024177 31 1.2
03_05_0284 - 22712390-22712899,22712978-22713304,22713742-227140... 29 4.8
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409... 28 6.3
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 28 8.4
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507... 28 8.4
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235 28 8.4
>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 32.7 bits (71), Expect = 0.29
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = -3
Query: 686 CSSDKGH---SAGNGDSAWN-GDSIWRGESERNSDSLERAGSVSNGDSVGRGDSR 534
C SD G S+G+G S+WN GD I G+S+ S S G+ G GRG R
Sbjct: 996 CGSDWGSPKFSSGDGPSSWNKGDKI-GGDSQNGSWS-RPGGNFEGGRGFGRGRGR 1048
>04_01_0353 - 4623910-4624812
Length = 300
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 528
GD+ T+ ++G S GNG + G+ + S + S S G ++GRG S A+
Sbjct: 225 GDAGSTARDHERGGSTGNGLGRGRSSAEEVGDGDAGSTARGHGRSGSTGGALGRGRSIAE 284
Query: 527 KFSLG 513
+ G
Sbjct: 285 EVGDG 289
>06_03_0496 - 21415596-21416068,21416618-21417224
Length = 359
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 674 KGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGR 546
KG A + D W GESE + DSL R SV V R
Sbjct: 249 KGKGANKKNEGQREDEDWIGESEDDKDSLSRGSSVKRSKYVTR 291
>09_04_0179 - 15366119-15366916
Length = 265
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/65 (26%), Positives = 20/65 (30%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 528
G S G+ S G AG+G G GE E G G G +
Sbjct: 98 GSSAGSGAGSYAGSGAGSGSGYNQGQGTGEGEGEGQGQGYGSGHGAGTGSGYGEGHGEGN 157
Query: 527 KFSLG 513
F G
Sbjct: 158 GFGSG 162
>08_02_0826 - 21583507-21583555,21584000-21584679
Length = 242
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSN---GDSVGRG 543
G +G+ S G +G+G +W+G S G S R+ AGS + G + G G
Sbjct: 84 GSGSGSYSGSGSGSGSGSGSGSWSGSS--SGSSSRSGGGGSSAGSSAESGAGSNAGPG 139
>10_08_0230 + 16023569-16024177
Length = 202
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSI---WRGESERNSDSLERAGSVSNGDSVGRGDS 537
GD G S G +G+G S+ N S+ W G E N+ + NGD G G S
Sbjct: 84 GDGGGPLGSVGSGSGSGSGSSSSNSSSVMRAWYGGGEANAGGV----GGGNGDGYGGGYS 139
Query: 536 RADKFSLG 513
+ + G
Sbjct: 140 GSSGYGSG 147
>03_05_0284 -
22712390-22712899,22712978-22713304,22713742-22714091,
22714176-22714401,22714655-22714728,22715813-22716152
Length = 608
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = -3
Query: 674 KGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNG----DSVGR-GDS 537
+G + +GD +GD WR + +SD + +V+ G D++GR GD+
Sbjct: 65 RGATGRDGDGDSDGDGAWRRATGGSSDMTDATATVARGSGRLDTLGREGDT 115
>12_01_1045 -
10739396-10739402,10739968-10740239,10740361-10740941,
10741566-10742586
Length = 626
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 668 HSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGR 546
H G +A G + R E+ERN +L A +GD V R
Sbjct: 238 HEVERGQAASFGKVLLRTENERNETALHDAVRAGDGDMVRR 278
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 601 LRSDSPLHIESPFHAESPLPAECPLSDEHD 690
+ S P+H+E P AE+ P E P D H+
Sbjct: 596 VESSPPMHVEDPKDAEAGQPCE-PAKDAHN 624
>06_03_1406 -
29949367-29949556,29949753-29949837,29950625-29950791,
29951232-29952049
Length = 419
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 452 SSPAKEFELFANSPKPSETLLPKKIYLPENPLYQLNHHCS 571
+SPA + +AN+P PSE +L + +P L+ ++ H S
Sbjct: 54 ASPATPVDAYANAPPPSEDVL---LRIPGAQLHLIDRHRS 90
>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
Length = 416
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 706 ETQLVHHAHLTKDTQQAMEI 647
ETQL+ AH++KD QAM++
Sbjct: 300 ETQLLGGAHMSKDQDQAMDL 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,370
Number of Sequences: 37544
Number of extensions: 306760
Number of successful extensions: 1077
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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