Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00676
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.6  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 408 RPKTKISTSFKTTGFLLRQKNSNYLLTLLSRVKL 509
           RPKTK S   +TT   L +    +L   L ++K+
Sbjct: 40  RPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKV 73


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 275 QDIFPEISSKHTMPPEIRLYGQEFTLSE 358
           Q + P++S   T P E RLY      S+
Sbjct: 410 QTLRPQVSPDRTSPMEYRLYNPALIQSQ 437


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 287 GKYLGVLQCEYCNNVF 240
           GK+ GV  CE C   F
Sbjct: 119 GKHYGVYSCEGCKGFF 134


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 287 GKYLGVLQCEYCNNVF 240
           GK+ GV  CE C   F
Sbjct: 119 GKHYGVYSCEGCKGFF 134


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 141 EETSETKSVEDFNVAANAMVETEAITPEPTYDKENVVAI 257
           +E+S  +SVE   +  NA+V T A    P  + E +  +
Sbjct: 26  QESSTGQSVEFSPMELNALVGTPAAPNMPAEEGEGMAGV 64


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 410 TQNQNFDELQNNRI 451
           T+N NFD +Q N I
Sbjct: 318 TKNPNFDRMQGNPI 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,713
Number of Sequences: 438
Number of extensions: 3404
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)