Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00676
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 35 0.046
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 35 0.046
At3g16640.1 68416.m02127 translationally controlled tumor family... 35 0.046
At2g11005.1 68415.m01177 glycine-rich protein 34 0.11
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 33 0.14
At3g05540.1 68416.m00607 translationally controlled tumor family... 30 1.3
At5g53440.1 68418.m06641 expressed protein 30 1.7
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 29 2.3
At3g15400.1 68416.m01954 anther development protein, putative si... 29 3.0
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 29 4.0
At1g03780.2 68414.m00358 targeting protein-related similar to mi... 29 4.0
At1g03780.1 68414.m00359 targeting protein-related similar to mi... 29 4.0
At1g65440.1 68414.m07424 glycine-rich protein 28 7.0
At5g54790.1 68418.m06825 hypothetical protein 27 9.2
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 35.1 bits (77), Expect = 0.046
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSR 534
G S+G + G+S G GDS G R +S R+ +S G +G S G G R
Sbjct: 116 GTSSGANDRGGGGYSRGGGDSDRGGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQR 173
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 35.1 bits (77), Expect = 0.046
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSR 534
G S+G + G+S G GDS G R +S R+ +S G +G S G G R
Sbjct: 116 GTSSGANDRGGGGYSRGGGDSDRGGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQR 173
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 35.1 bits (77), Expect = 0.046
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 129 NPNPEETSETKSVEDFNVAANAMVETEAITPEPTYDKENVVAIFTLKNPKIFSLKFHLNT 308
NP+ EE E + V+D +V+T + +PTYDK+ +A + K K+ + K
Sbjct: 48 NPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIA-YIKKYIKLLTPKLSEED 106
Query: 309 QCPLK 323
Q K
Sbjct: 107 QAVFK 111
>At2g11005.1 68415.m01177 glycine-rich protein
Length = 170
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDS 537
GD G+ G +G+GD +GD G R+SD + +GDS G GD+
Sbjct: 13 GDGGGSGGGGGSGDGSGSGDGGGSGD----GGGSRDSDGSGDSSGGGSGDSGGFGDN 65
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSA--WNGDSIWRGE-SERNSDSLERAGSVSNGDSVGRGDS 537
GD G+ S G+GDS+ +GDS G+ S+ NS S + +G S D G GD+
Sbjct: 31 GDGGGSGDGGGSRDSDGSGDSSGGGSGDSGGFGDNSDNNSVSSDSSGGGSR-DGGGSGDN 89
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 528
GDS S G S +GDS + + + DS ++ S+GDS + ++D
Sbjct: 1154 GDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSCSKSQKKSD 1213
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 528
GDS S G S +GDS + + + DS ++ S+GDS + ++D
Sbjct: 1118 GDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1177
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 528
GDS S G S +GDS + + + DS ++ S+GDS + ++D
Sbjct: 1130 GDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1189
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 528
GDS S G S +GDS + + + DS ++ S+GDS + ++D
Sbjct: 1142 GDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1201
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 528
GDS S G S +GDS + + + DS ++ S+GD+ + + D
Sbjct: 1166 GDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSCSKSQKKSDGDTNSKSQKKGD 1225
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 528
GDS S G S +GD+ + + + + DS ++ ++GDS + + D
Sbjct: 1190 GDSNSKSSKKSDGDSCSKSQKKSDGDTNSKSQKKGDGDSSSKSHKKNDGDSSSKSHKKND 1249
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -3
Query: 701 STGTSCSSDKGHSAGNGDSA----WNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSR 534
S G SCS + S G+ +S +GDS + + + DS ++ ++GDS + +
Sbjct: 1200 SDGDSCSKSQKKSDGDTNSKSQKKGDGDSSSKSHKKNDGDSSSKSHKKNDGDSSSKSHKK 1259
Query: 533 AD 528
+D
Sbjct: 1260 SD 1261
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 528
GDS S G S +GDS + + + + D+ ++ +GDS + + D
Sbjct: 1178 GDSNSKSSKKSDGDSNSKSSKKSDGDSCSKSQKKSDGDTNSKSQKKGDGDSSSKSHKKND 1237
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 528
GD+ S G S+ +GDS + + + DS ++ S+GDS + +++
Sbjct: 1214 GDTNSKSQKKGDGDSSSKSHKKNDGDSSSKSHKKNDGDSSSKSHKKSDGDSSSKSHKKSE 1273
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDS 555
GDS+ S + G S+ +GDS + + + DS ++ S GDS
Sbjct: 1226 GDSSSKSHKKNDGDSSSKSHKKNDGDSSSKSHKKSDGDSSSKSHKKSEGDS 1276
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -3
Query: 704 DSTGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRAD 528
+S S ++G S +GDS + + + DS ++ S+GDS + ++D
Sbjct: 1107 NSKSQSLKKNEGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSD 1165
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 129 NPNPEETSETKSVEDFNVAANAMVETEAITPEPTYDKENVV 251
NP+ EE E + V+D V +++T + +P++DK+ V
Sbjct: 35 NPSGEEGGEDEGVDDQAVKVVDIIDTFRLQEQPSFDKKQFV 75
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 698 TGTSCSSDKGHSAGNGDSAWNGDSIWRGESERNSD-SLERAGSVSNGD 558
T +S KG S +G WNG +GES + + S E++ GD
Sbjct: 69 TSSSSKRRKGKSGESGSDRWNGKDDDKGESSKKTKVSSEKSRKRDEGD 116
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = -3
Query: 707 GDSTGTSCSSDKGHS-AGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSV-GRGDSR 534
GD G D+G +G GD G RG S R D R G G GRGD R
Sbjct: 11 GDGRGRGGGGDRGRGYSGRGDGRGRGGDGDRGYSGR-GDGHGRGGGGDRGRGYSGRGDGR 69
>At3g15400.1 68416.m01954 anther development protein, putative
similar to anther development protein ATA20 GB:AAC50042
GI:2708813 from [Arabidopsis thaliana]
Length = 416
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -3
Query: 707 GDSTGTSCSSD--KGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSR 534
G+ G+S S +G +G G G+ I G ++ N + A G+ +G+G
Sbjct: 257 GEGIGSSGGSGFGEGIGSGGGTGIGIGEGIGSGSAQPNCGPVTGAPGSGFGEGIGQGSGP 316
Query: 533 ADKFSLGV 510
+ +G+
Sbjct: 317 GEGIGIGI 324
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = -3
Query: 665 SAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNGDSVGRGDSRADKFSLG 513
S G G GDS + G E S +G GDS GRG + S G
Sbjct: 625 SGGGGGRGGYGDSGYGGRGESGYGSRGDSGYGGRGDSGGRGSWAPSRDSSG 675
>At1g03780.2 68414.m00358 targeting protein-related similar to
microtubule-associated protein / targeting protein for
Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
Restricted expression proliferation associated protein
100 (p100) (Differentially expressed in lung cells 2)
(DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
(C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
sapiens}
Length = 725
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 189 NAMVETEAITPEPTYDKENVVAIFTLKNPKIFSL 290
N V+ T EP DKEN+ T K P FSL
Sbjct: 133 NKTVDASDPTTEPIEDKENIAPACTPKPPMQFSL 166
>At1g03780.1 68414.m00359 targeting protein-related similar to
microtubule-associated protein / targeting protein for
Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
Restricted expression proliferation associated protein
100 (p100) (Differentially expressed in lung cells 2)
(DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
(C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
sapiens}
Length = 687
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 189 NAMVETEAITPEPTYDKENVVAIFTLKNPKIFSL 290
N V+ T EP DKEN+ T K P FSL
Sbjct: 133 NKTVDASDPTTEPIEDKENIAPACTPKPPMQFSL 166
>At1g65440.1 68414.m07424 glycine-rich protein
Length = 1647
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 680 SDKGHSAGNGDSAWNGDSIWRGESERNSDSLERAGSVSNG 561
+D G S G+G + + W+G S+R+ R G NG
Sbjct: 1434 ADHGSSGGSGWGSSQSEGGWKGNSDRSGSG--RGGEYRNG 1471
>At5g54790.1 68418.m06825 hypothetical protein
Length = 119
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 126 NNPNPEETSETKSVEDFNVAANAMVETEAITPEPTYDKENVVA 254
++ NPEE+S T EDF A++++V+ + D + VA
Sbjct: 21 DDQNPEESSWTMYFEDFFEASSSIVDVGDFSSSSVSDAASFVA 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,563,332
Number of Sequences: 28952
Number of extensions: 263608
Number of successful extensions: 985
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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