Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00675
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   6.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 447 SPPAKRSDE*IDAICN 400
           +PP   ++E +DA+CN
Sbjct: 453 APPQLPTEESVDALCN 468


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 537  SPSTAGGTFLVRLQTTHHLKTAGTPQIQPYSP 442
            S     G F +R  TT+HL+     +I    P
Sbjct: 932  SQQNVAGVFNLRPATTYHLRIVAENEIGASDP 963


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 93  NQRHFVVVDL*RCSLSFEDFSHLFQ 19
           N+   V++D  RCS+ +    H F+
Sbjct: 199 NKNGSVILDTARCSMKWTLIEHAFE 223


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 536 HPPLLAAPSWCDYRQ 492
           H PLLA PS+  + Q
Sbjct: 343 HMPLLADPSFAQFSQ 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,080
Number of Sequences: 438
Number of extensions: 3394
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)