Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00674
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...   107   2e-24
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    40   5e-04
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    35   0.013
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    32   0.072
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    30   0.29 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.88 
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    28   1.2  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    28   1.5  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   2.0  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   3.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   3.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   6.2  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   6.2  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   6.2  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    26   6.2  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   6.2  

>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score =  107 bits (257), Expect = 2e-24
 Identities = 49/88 (55%), Positives = 61/88 (69%)
 Frame = +3

Query: 246 SQGVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYS 425
           S  +R SHLLVKH  SRRPSSW+EEHITR+KEEA  + + Y + +        +LA   S
Sbjct: 64  SPKIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKES 123

Query: 426 DCSSAKRDGDLGRFKKGQMQKPFEDVAF 509
           DCSSA+R G+LG F + +MQKPFED AF
Sbjct: 124 DCSSARRGGELGEFGRDEMQKPFEDAAF 151



 Score = 32.7 bits (71), Expect = 0.054
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
           LP+ W  + SRS    Y+ N  T +S WE P
Sbjct: 6   LPKPWIVKISRSRNRPYFFNTETHESLWEPP 36



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 509 SLKIGQLSQPVHTDSGIHIILRTA 580
           +LK G++S  V T SG HII R A
Sbjct: 152 ALKPGEISGVVETSSGFHIIQRHA 175


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +1

Query: 28  RKRKNLLAFPAQRTNDMASTQEEI--LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
           R+  N  A      + M+S +++   LP GWE R++ S G TYY++ +T+ + W +P
Sbjct: 212 RQTNNTSALSNSNAHIMSSFEDQYGRLPPGWE-RRADSLGRTYYVDHNTRTTTWTRP 267


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPAS 207
           LP GWE R + +T   Y+++ +TK + W+ P  P+S
Sbjct: 347 LPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPSS 381


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
           LP GW   K+ S G+ YY N   KKS +++P
Sbjct: 5   LPPGWTEHKAPS-GIPYYWNAELKKSTYQRP 34


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +3

Query: 255 VRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCS 434
           +  S L +  S     S  + E +   K++A   +QE+R+K +    KF+EL +   D +
Sbjct: 43  ISASFLSLSRSIDDYDSMVQRELVPAKKKKATIRIQEFRQKHVQLLEKFDELKAHVRDIA 102

Query: 435 SAKRDGDL 458
            AK   +L
Sbjct: 103 QAKNRKEL 110


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 94  EILPEGWEARKSRSTGMTYYLNKHTK--KSQWEKP 192
           E LP GW A+     G  +Y+N+  +  + QWE P
Sbjct: 8   EGLPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 112 WEARKSRSTGMTYYLNKHTKKSQWEKP 192
           W   K+  + + YY N  T+KS WEKP
Sbjct: 36  WHEVKTEDSRV-YYYNSVTRKSVWEKP 61


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 76  MASTQEEILPEGWEARKSRSTGMTYYLNKHTKKS--QWEKP 192
           MA    E LP GW A+        +Y+N+   K+  QWE P
Sbjct: 1   MAYQTREGLPNGWVAQWDERYKCYFYVNESDPKAKPQWECP 41


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 586 SLGSSKNDMNARVSVNWLAQLSYFQGNAT 500
           SL + KND+     +NWL  LS+FQ N++
Sbjct: 430 SLTTDKNDLY----INWLKSLSFFQTNSS 454


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 393 AKFEELASTYSDCSSAKRDGDLGRFKK 473
           +KF  LAS Y   + A + G+LG F K
Sbjct: 295 SKFPNLASVYIPLTRALKSGNLGEFGK 321


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +3

Query: 306  SWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKK 473
            S REE IT  + E LD+ +       ++E+  +ELA    D +  ++D  L  FKK
Sbjct: 999  STREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLED-AVREKDSALS-FKK 1052


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 702  LNLCSRKKKIYTDCIAICGYISW 634
            LNL S +K +  DC+   G  SW
Sbjct: 1059 LNLASHRKYLVEDCLEFMGSRSW 1081


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 318 EHITRTKEEALDILQEYRRKI-IDREAKFEELASTYSD 428
           E++   K +   ++ E  R   + REAKFE L ++ SD
Sbjct: 761 EYVLYKKSKGSQVITEKARSNELSREAKFENLVASLSD 798


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 86  VEAMSLVRCAGNANRFLRFLNCRRKFLV 3
           V A+ L+R  GNA   L+ LN   K+++
Sbjct: 386 VRALKLIRYYGNAFDVLKALNVEEKYII 413


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 10  NFLLQLRKRKNLLAFPAQRTNDMASTQEEILPE 108
           N LL+ +KR +   F  QR+   AST +  L E
Sbjct: 151 NILLENKKRVSFYPFSVQRSQKFASTLKMCLEE 183


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 459 PNPHHVL-LMNNQNMYLPALQI 397
           P P HV  +M+++N YL ALQ+
Sbjct: 532 PKPSHVKNIMHHENQYLQALQL 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,898
Number of Sequences: 5004
Number of extensions: 54656
Number of successful extensions: 175
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)