Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00674
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 91 6e-19
09_04_0095 - 14556508-14556550,14556824-14556966,14557703-145577... 47 2e-05
04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329 42 4e-04
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 42 4e-04
07_03_1741 + 29156076-29156316,29156554-29156676,29156784-291568... 40 0.002
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 37 0.014
01_02_0105 + 11171422-11171667,11171923-11172111 33 0.23
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 33 0.30
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 33 0.30
12_01_0794 + 7285100-7285369,7285931-7286338 32 0.40
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 32 0.40
11_03_0142 + 10675764-10675991,10676533-10676943 32 0.53
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 32 0.53
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 31 0.92
05_01_0534 - 4601844-4602297,4602689-4602847,4602947-4603514,460... 31 1.2
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 29 4.9
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719 28 6.5
03_03_0028 + 13893813-13893959,13894961-13895264,13896557-138967... 28 8.6
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 91.5 bits (217), Expect = 6e-19
Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Frame = +3
Query: 255 VRCSHLLVKHSGSRRPSSWREEH----ITRTKEEALDILQEYRRKIIDREAKFEELASTY 422
+R SH+L+KH GSRR +SWR+ T+++A D+ + R KI+ E KFE++A+
Sbjct: 122 LRASHILIKHEGSRRKASWRDPEGVAISATTRDDAADLARALREKIVAGERKFEDVATEE 181
Query: 423 SDCSSAKRDGDLGRFKKGQMQKPFE 497
SDC+SAKR GDLG F++G+MQK FE
Sbjct: 182 SDCNSAKRGGDLGPFERGKMQKAFE 206
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +2
Query: 458 GSFQERSNAETI*RRRISLKIGQLSQPVHTDSGIHIILRTA 580
G F+ + + ++LK+G++S V TDSG+HIILRTA
Sbjct: 194 GPFERGKMQKAFEKAVLALKVGEISDVVDTDSGVHIILRTA 234
>09_04_0095 -
14556508-14556550,14556824-14556966,14557703-14557744,
14557940-14558049,14558369-14558519
Length = 162
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 408 LASTYSDCSSAKRDGDLGRFKKGQMQKPFEDVAF 509
+A YS+C S K+ GDLG F +G+M PF+DVAF
Sbjct: 102 IAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAF 135
>04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329
Length = 327
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +2
Query: 452 GFGSFQERSNAETI*RRRISLKIGQLSQPVHTDSGIHIILRTA 580
G G+F R + +LK+G++S V TDSG+HIILRTA
Sbjct: 285 GGGTFGRRQMQKPFEDATFALKVGEMSDTVDTDSGVHIILRTA 327
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
LPE WE +STG YY N +T+ +QWE P
Sbjct: 235 LPENWEEALDQSTGQKYYYNTNTQATQWEPP 265
Score = 41.1 bits (92), Expect = 9e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 201
LP GW K ++G +Y+ N+ T +QW++PG P
Sbjct: 188 LPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAP 221
>07_03_1741 +
29156076-29156316,29156554-29156676,29156784-29156875,
29157577-29157677,29157752-29157862,29158254-29158362,
29158589-29158639,29158758-29158838
Length = 302
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +3
Query: 339 EEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQMQKPFEDVAF 509
E+ + +L + + II A +LA YS C S + G LG ++GQM FE+ AF
Sbjct: 105 EQDVRLLVDLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEEAAF 161
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 37.1 bits (82), Expect = 0.014
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
LP GWE R TG ++Y++ +T+ + WE P
Sbjct: 526 LPPGWEERFDSVTGKSFYIDHNTRTTTWEHP 556
>01_02_0105 + 11171422-11171667,11171923-11172111
Length = 144
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 342 EALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQMQK 488
+ LDI QE ++ D E K E L YS C S R L + KKG++ K
Sbjct: 15 DMLDIGQEQSSRLADHELK-EMLLKKYSGCLSRLRSEFLKKRKKGKLPK 62
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 342 EALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQMQK 488
+A D QE+ ++ D E K E L YS C S R L + KKG++ K
Sbjct: 15 DAADFGQEHSSRLADHELK-EMLLKKYSGCLSRLRSEFLKKRKKGKLPK 62
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 112 WEARKSRSTGMTYYLNKHTKKSQWEKP 192
W+ S + G YY NK T++S WEKP
Sbjct: 111 WQEHTS-ADGKKYYYNKKTRQSSWEKP 136
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
LP WE +G YYLN+ T K W +P
Sbjct: 79 LPLDWEQCLDLQSGRMYYLNRKTLKKSWIRP 109
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 201
LP+ W +TG YY N T +Q+EKP P
Sbjct: 19 LPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPP 52
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 31.9 bits (69), Expect = 0.53
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
LP WE +G YYLN+ T + W +P
Sbjct: 65 LPMDWEQCLDLHSGRMYYLNRKTMRKSWVRP 95
>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 31.9 bits (69), Expect = 0.53
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 28 RKRKNLLAFPAQ--RTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGG 198
+ +KN F + T+D ASTQ + LP+G+ S N++T+ + ++PGG
Sbjct: 1420 KDKKNRETFQKELFMTSDQASTQNQRLPKGYAYVPRDSLSKDKLRNRNTQAHEPQEPGG 1478
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 31.1 bits (67), Expect = 0.92
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 201
LP+ W +TG Y+ N TK Q+++P P
Sbjct: 23 LPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAP 56
>05_01_0534 -
4601844-4602297,4602689-4602847,4602947-4603514,
4604853-4605246
Length = 524
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -3
Query: 169 LYAY*DSMSFLYFYSCELPILQEEFLLE*KPCRWCVVPGTP 47
L A+ DS F + +P LQ LL +P RW VPGTP
Sbjct: 387 LAAHTDSGFFTFILQSPVPGLQ---LLRHRPDRWVTVPGTP 424
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 330 RTKEEALDILQEYRRKIIDREAKFEELASTYSDCS 434
R +EEAL QE R++ + E EEL + YS+ S
Sbjct: 413 RAEEEALREKQEEERRLENPELYLEELRARYSELS 447
>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
Length = 780
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +3
Query: 291 SRRP--SSWREEHITRTKEEALDILQEYRRKIIDREAK 398
S++P S+W +E + + EA+D+ E++ + + REAK
Sbjct: 57 SKKPELSAWLDE-LKKVSYEAIDVFDEFKYEALRREAK 93
>03_03_0028 +
13893813-13893959,13894961-13895264,13896557-13896761,
13897428-13897646,13897734-13897869,13899130-13899387,
13899402-13899686
Length = 517
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 279 KHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDL 458
+HSG + + R E R + EAL + RRK++ ++ +A T + +R G
Sbjct: 39 EHSGGEKQPALRSEECRRERAEALK--GQVRRKLLKATSRISSVAETVVLVDTLERLGID 96
Query: 459 GRFK 470
F+
Sbjct: 97 NHFR 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,941,954
Number of Sequences: 37544
Number of extensions: 335584
Number of successful extensions: 853
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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