Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00674
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   0.95 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   0.95 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.7  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.7  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 612 KKCKTIISNLYTHISQYNQYRSFSFYY--IN*DCLP 713
           K+ K I SN Y + +  N Y S   YY  IN + +P
Sbjct: 299 KETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIP 334


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 612 KKCKTIISNLYTHISQYNQYRSFSFYY--IN*DCLP 713
           K+ K I SN Y + +  N Y S   YY  IN + +P
Sbjct: 310 KETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIP 345


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 361 KSIAVKSLTEKLNLKSWQVHILIVHQQNVMGI 456
           K+  +K+   +LN K +  HI++   +NV G+
Sbjct: 482 KNTMIKARQYRLNHKPFTYHIVVNSDKNVKGM 513


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 361 KSIAVKSLTEKLNLKSWQVHILIVHQQNVMGI 456
           K+  +K+   +LN K +  HI++   +NV G+
Sbjct: 482 KNTMIKARQYRLNHKPFTYHIVVNSDKNVKGM 513


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 361 KSIAVKSLTEKLNLKSWQVHILIVHQQNVMGI 456
           K+  +K+   +LN K +  HI++   +NV G+
Sbjct: 108 KNTMIKARQYRLNHKPFTYHIVVNSDKNVKGM 139


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 16  LLQLRKRKNLLAFPAQRTNDMASTQEEIL 102
           L+  + ++++L    QR ND   T+EE++
Sbjct: 42  LVVKQTKQSVLEEARQRANDAGLTEEEVV 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,604
Number of Sequences: 438
Number of extensions: 4474
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)