Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00674
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PI... 99 3e-21
At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase PPI... 52 5e-07
At5g19370.1 68418.m02308 rhodanese-like domain-containing protei... 46 2e-05
At2g41020.2 68415.m05066 WW domain-containing protein contains P... 42 4e-04
At2g41020.1 68415.m05067 WW domain-containing protein contains P... 42 4e-04
At3g59770.1 68416.m06670 sacI homology domain-containing protein... 39 0.004
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 37 0.012
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 33 0.25
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 31 0.77
At3g13225.1 68416.m01660 WW domain-containing protein contains P... 31 0.77
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 31 0.77
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 31 0.77
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 31 0.77
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 31 0.77
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 31 1.0
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 3.1
At3g32190.1 68416.m04102 hypothetical protein 28 5.4
At5g56550.1 68418.m07057 expressed protein 28 7.2
>At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PIN1)
/ cyclophilin / rotamase identical to Chain A, Solution
Structure Of Pin1at From Arabidopsis Thaliana
GI:22218833; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 119
Score = 99.1 bits (236), Expect = 3e-21
Identities = 45/89 (50%), Positives = 63/89 (70%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 VRCSHLLVKHSGSRRPSSWREEH----ITRTKEEALDILQEYRRKIIDREAKFEELASTY 422
V+ SH+L+KH GSRR +SW++ +T T+E A++ L+ R I+ +A FEE+A+
Sbjct: 7 VKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRV 66
Query: 423 SDCSSAKRDGDLGRFKKGQMQKPFEDVAF 509
SDCSSAKR GDLG F +GQMQKPFE+ +
Sbjct: 67 SDCSSAKRGGDLGSFGRGQMQKPFEEATY 95
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 458 GSFQERSNAETI*RRRISLKIGQLSQPVHTDSGIHIILRTA 580
GSF + +LK+G +S V TDSG+HII RTA
Sbjct: 79 GSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119
>At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase
PPIC-type family protein similar to SP|Q9Y237
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
(EC 5.2.1.8) (Rotamase Pin4) (PPIase Pin4) (Parvulin 14)
{Homo sapiens}; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 142
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +3
Query: 393 AKFEELASTYSDCSSAKRDGDLGRFKKGQMQKPFEDVAF 509
A+F ++A+ YS+C S K+ GDLG F +G+M PF+DVAF
Sbjct: 77 AEFAKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQDVAF 115
>At5g19370.1 68418.m02308 rhodanese-like domain-containing protein /
PPIC-type PPIASE domain-containing protein low
similarity to MPT-synthase sulfurylase [Synechococcus
sp. PCC 7942] GI:2950364; contains Pfam profiles
PF00581: Rhodanese-like domain, PF00639: PPIC-type
PPIASE domain; identical to cDNA peptidyl-prolyl
cis-trans isomerase GI:2246379
Length = 299
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = +3
Query: 285 SGSRRPSSWRE---EHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGD 455
SGS S+ RE +H+ K +++ E ++K +D E + +LA+ YS C S K G
Sbjct: 85 SGSSGSSASREILVQHLL-VKNNDVELFAELQKKFLDGE-EMSDLAAEYSICPSKKDGGI 142
Query: 456 LGRFKKGQMQKPFEDVAF 509
LG K GQM FE+ AF
Sbjct: 143 LGWVKLGQMVPEFEEAAF 160
>At2g41020.2 68415.m05066 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 382
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
LP GW K ++G TYY N+HT QWE+P
Sbjct: 194 LPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 55 PAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
P + + +S + E W ++G Y+ N T SQWE P
Sbjct: 224 PVELSYATSSAPPVLSKEEWIETFDEASGHKYFYNTRTHVSQWEPP 269
>At2g41020.1 68415.m05067 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 463
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
LP GW K ++G TYY N+HT QWE+P
Sbjct: 194 LPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 55 PAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
P + + +S + E W ++G Y+ N T SQWE P
Sbjct: 224 PVELSYATSSAPPVLSKEEWIETFDEASGHKYFYNTRTHVSQWEPP 269
>At3g59770.1 68416.m06670 sacI homology domain-containing protein /
WW domain-containing protein contains Pfam profiles
PF00397: WW domain, PF02383: SacI homology domain;
identical to cDNA SAC domain protein 9 (SAC9)
GI:31415734
Length = 1630
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
LP GWE R TG +YY++ +TK + W P
Sbjct: 510 LPPGWEKRADAVTGKSYYIDHNTKTTTWSHP 540
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 88 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 201
++ LP+ W+ STG+ YY N T +Q+E+P P
Sbjct: 18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAP 55
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 139 GMTYYLNKHTKKSQWEKP 192
G Y+ NK TKKS WEKP
Sbjct: 217 GRKYFFNKRTKKSTWEKP 234
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 106 EGWEARKSRSTGMTYYLNKHTKKSQWEKPGG 198
+ W A KS + G+ YY N T +S +EKP G
Sbjct: 157 DAWTAHKSEA-GVLYYYNSVTGQSTYEKPPG 186
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 97 ILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
ILP A S + G YY N TK S W+ P
Sbjct: 203 ILPGTDWALVSTNDGKKYYYNNKTKVSSWQIP 234
>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
profile PF00397: WW domain
Length = 863
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
LP W+A ST YY N T ++ W +P
Sbjct: 831 LPSEWQAYWDESTKKVYYGNTSTSQTSWTRP 861
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 88 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 88 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 88 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 192
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 31.1 bits (67), Expect = 0.77
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 148 YYLNKHTKKSQWEKP 192
YY NK TK+S WEKP
Sbjct: 213 YYYNKRTKQSNWEKP 227
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 100 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPA 204
LP+ W+ TG Y+ N T +Q+E+P A
Sbjct: 17 LPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSA 51
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = +3
Query: 261 CSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSA 440
CS L + + R + W +E +T + ++ + + + AK ++ Y +CSS+
Sbjct: 180 CSRLSQEKELTERHAKWLDEELTAKVDSYAELRRRHSDLESEMSAKLVDVEKNYIECSSS 239
>At3g32190.1 68416.m04102 hypothetical protein
Length = 358
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 321 HITRTKEEALDILQEYRRKIIDRE 392
H +RT E D++Q Y R ++DRE
Sbjct: 47 HSSRTNSELNDMIQYYERLLLDRE 70
>At5g56550.1 68418.m07057 expressed protein
Length = 172
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +3
Query: 318 EHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQMQKPFE 497
E TR +EE DI+QE D E + + S CS D D P E
Sbjct: 18 EDPTRIQEEE-DIVQEVSTTFSDEEDNSSSCSLSSSMCSDFTEDDDDDDVSSSSSNGPLE 76
Query: 498 DVA 506
D++
Sbjct: 77 DLS 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,828,543
Number of Sequences: 28952
Number of extensions: 284101
Number of successful extensions: 811
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -