Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00671
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    28   1.2  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   6.4  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   8.4  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    25   8.4  

>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 223 IVQSLHSIETTNHLYFTKEPLGFFA 149
           + Q++H++   NH YFTK P  F +
Sbjct: 192 LYQAIHNLSKFNHRYFTKYPTVFLS 216


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = -2

Query: 262 MEIHRGCRLLS*NIVQSLHSIETTNHLYFTKEPLGFFAILVD 137
           + +HR   L+S N+ +++  ++ +    F K PL + A+++D
Sbjct: 628 LHLHRFHELVSENLAKAVEYLQKSMQPQFDKSPLFWNALILD 669


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 597 PSPSQSYRGKIVIKCQYISNFSQIYIM 677
           P+   S+ G   +KC Y +N  Q+Y +
Sbjct: 344 PAEFLSHEGHAAVKCSYKANEGQLYCL 370


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 300 VTTHSTLSGQSSLWKY 253
           VTTH     Q SLWKY
Sbjct: 351 VTTHGFAKNQVSLWKY 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,441
Number of Sequences: 5004
Number of extensions: 56226
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)